Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01235 ATGGGTATGGAGCTGAAACGCCTCTTTCTCATTTTCTTCTTCTTCTTCGAGCTCTGTATTTTGGCCTCCAATGGCGTTTCTGACCACAATCAGATTCTTCTCGACAGAGAAAGCTTGCTTTCTTTCAAAGCATTGCTAGACACCTCAAAAACTCTGCCATGGAACTCATTGGTCCCTCACTGCTTTTGGGTCGGAGTTTCTTGCCGATTCCGTCGAGTTACAGAGCTCTCCCTTTCATCTCGTTCCCTCAAAGGCCGACTCTCTCCTTCCCTTTTCAATATCTCGAGCCTCTCTGTTCTTGACCTTTCAAACAATGGCCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGACGGAAATCAGTTTTCCGGCGACTTCCCCATCGGACTCACTGAGTTGACCCAGATGGAGAATCTCAAGTTGGGGAGTAATTTGTTTACAGGGATAATCCCGCCGGAGCTTGGAAATTTAAAGCAACTACGGACGCTTGACCTTTCCGGCAATGCCTTCGTCGGAAATGTTCCGACCCATATCGGAAATTTGACGAGAATCTTATCATTGGACCTTGGCAACAATCTTTTATCAGGTTCACTCCCATTAACCATCTTTACTGAGCTTAAATCCTTAACTTCTTTGGACATTTCCAACAACTCGTTTTCTGGTTCAATCCCACCTGAAATTGGTAATCTACAGCATTTGACTGACCTTTACATCGGCATTAACCACTTTTCCGGCGAGTTGCCGCCTGAATTTGGTGATCTTGTGTTGCTAGAGAACTTTTTCGCTCCTTCTTGTTCTTTAACTGGTCCATTGCCCGAAGAACTATCCAAGTTGAAATCATTGAGTAAACTGGACCTTTCATACAACCCACTTGACTGTTCTATCCCAAAATCGATTGGTGAGTTACAGAACTTGACCATATTGAATCTGGTTTACACTGACATTAATGGTTCCATTCCTGCTGAACTTGGAAACTGCAAAAACTTGAAAACATTGATGCTTTCATTCAACTCTCTATCTGGGATGTTGCCACAAGAGCTTTTAGAGCTTCCCATCTTGACATTTTCTGCAGAGAAGAATCAGCTTTCTGGGCCATTGCCTTCTTGGCTTGGCAAATGGGATCGTGTTGAATCTATCTTACTGTCGAGTAATCGGTTCACCGGGGAAATCCCACCTGAGATTGGGAATTGCTCAATGCTTAATCACCTCAGTTTGAGAAATAACATGTTAACAGGCTCAATACCTAAAGAGATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGATAGTAATTTCCTTTCGGGTTCGATCGACGACACGTTCGAGCTGTGTAGAAACCTTACACAGTTGGTTTTGGTAGACAATCTGATTGTTGGTACAATACCTGAGTACTTCTCAGACCTTCCCTTACTCGTAATCAACCTCGACTCGAATAATTTCACCGGTTCGTTACCAAGAAGTCTATGGAACTCGGTGAATTTGATGGAGTTTTCTGCTGCAAATAACCAATTGGAGGGTCATCTCCCTTCAGAGATTGGTTATGCAGCTTCACTTCAGAGGCTTGTTCTTAGCAACAATAGGTTGACAGGTACAATACCAAATGAGATTGGAAATCTCACAGCCCTTTCTGTTCTAAACTTGAATTCTAATCTGCTTGAAGGAACTATTCCAGCCATGCTTGGAGATTGTAAAGCTCTTACAACATTGGACCTCGGAAACAATGGTCTAAATGGGTCGATACCGGAAGGACTTGCAGAGCTTGCTGAATTACAGTGCCTTGTTCTTTCGCACAACGAGTTATCTGGAGCAATACCTTCCAGGACATCTACTTATTTTCAACAAGTGACTATTCCTGATTTGAGCTTTGTTCAACATCATGGTGTTTTTGATTTGTCCCATAATAGATTGTCCGGTAGCATACCTGATGAACTAGGGGAGTGTGTTGTCGTGGTGGATCTTTTACTGAACAATAATCTACTTTCTGGAGAGATTCCTAAATCTCTTTCTCACTTAACAAACCTGACAACCTTGGATTTGTCTGGCAATATGCTTTCTGGTCCTATTCCCGCAGAGCTTGGCGATGTTCTCAAGCTGCAAGGCCTGTATCTTGGGAATAATCGCCTCACCGGATTGATCCCGGTAAGCTTGAGTCGTTTGAGTAGCTTGGTGAAGTTGAACTTAACTGGTAATAGACTATCTGGTTCAGTTCCAGATCCTCTTGGTGATCTGAAAGCTTTAACTCATCTGGATCTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTTGTCTCTGTCCAACGTGTTGAATCTTGTGGGGCTTTATGTACAAGAGAACAGGCTTTCTGGACAGATTGTAGAGCTTTTCCCAAGCTCATTTACATGGAAGATTGAAGCTTTGAATTTGAGTCGTAACGAGTTCGAGGGCGTTCTTCCACGAGCATTAGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTCCAGATCTTGGGGATCTTATGCAACTTGAGTACTTTGATGTTTCAAATAACAAGCTCTCAGGAGAGATTCCAGAGAAACTATGCAGCCTGTTCAATATGCTCTACCTGAATTTGGCGAAAAACAGTCTCGAAGGACCGATCCCGAAAAGCGGCATTTGCCAGAATCTATCCAAAAGTTCATTTGTTGGGAACAAGAATCTTTGTGGGAGAATCATGGGTTACAATTGCAAGATCAAAAGCATGGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGTGTTCTTATTGTTTTTTCCGTGGCGTTTGCTATGCGAAAACAGATTATTCGAAGCCATAGAGATGATGATCCAGAGGACATGGAGGAAAGCAAACTAAACAGTTTGATGGATCCCAATCTCTATTTCTTAAGCAGCAGTAGATCGAAAGAGCCGTTAAGCATCAACGTGGCGATGTTCGAGCAGCCGCTTCTGAAGCTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATCATTGGAGATGGAGGATTTGGGACAGTGTACAAGGCCACCTTGCCTGATGGGAAAATTGTTGCTGTCAAGAAGCTAAGCCAAGCAAAAACACAGGGGCACAGGGAATTCATGGCTGAAATGGAAACCATAGGCAAAGTAAAGCATCATAATCTTGTTCCACTGCTTGGCTACTGCTCCCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGCGAAACCGAACCAGTGCGCTTGAAGTTCTTAACTGGGAGACTCGGTTCAAAGTCGCTTCGGGCGCAGCGTGCGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGTAATATACTACTGAATGAAGAGTTTGAACCAAAAGTTGGTGACTTTGGATTGGCAAGGTTGATCAGTGCTTGTGAGACTCATGTGACAACTGAGATAGCTGGAACGTTTGGTTACATTCCGCCGGAGTACGGGCAGAGCGGGAGATCGACGGCGAAAGGAGACGTTTATAGCTTCGGAGTGATTCTGCTGGAACTGGTAACTGGGAAGGAACCAACAGGACCTGAGTTTAAGGAGATTGAAGGTGGGAATCTGGTTGGTTGGGTGTTTCAGAAGATCAAGAAGGGTCAGGCGGCGGAGGTTCTGGACGTGACGGTTTTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTAAAGATTGCTTGTGTTTGTCTGTCTGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTCAAGTTTCTTAAAGGGATCAAATTACAGTAA 3903 43.61 MGMELKRLFLIFFFFFELCILASNGVSDHNQILLDRESLLSFKALLDTSKTLPWNSLVPHCFWVGVSCRFRRVTELSLSSRSLKGRLSPSLFNISSLSVLDLSNNGLYGSIPPQISNLRSLKVLALDGNQFSGDFPIGLTELTQMENLKLGSNLFTGIIPPELGNLKQLRTLDLSGNAFVGNVPTHIGNLTRILSLDLGNNLLSGSLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEFGDLVLLENFFAPSCSLTGPLPEELSKLKSLSKLDLSYNPLDCSIPKSIGELQNLTILNLVYTDINGSIPAELGNCKNLKTLMLSFNSLSGMLPQELLELPILTFSAEKNQLSGPLPSWLGKWDRVESILLSSNRFTGEIPPEIGNCSMLNHLSLRNNMLTGSIPKEICNAASLMEIDLDSNFLSGSIDDTFELCRNLTQLVLVDNLIVGTIPEYFSDLPLLVINLDSNNFTGSLPRSLWNSVNLMEFSAANNQLEGHLPSEIGYAASLQRLVLSNNRLTGTIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCKALTTLDLGNNGLNGSIPEGLAELAELQCLVLSHNELSGAIPSRTSTYFQQVTIPDLSFVQHHGVFDLSHNRLSGSIPDELGECVVVVDLLLNNNLLSGEIPKSLSHLTNLTTLDLSGNMLSGPIPAELGDVLKLQGLYLGNNRLTGLIPVSLSRLSSLVKLNLTGNRLSGSVPDPLGDLKALTHLDLSSNELDGDLPLSLSNVLNLVGLYVQENRLSGQIVELFPSSFTWKIEALNLSRNEFEGVLPRALGNLSYLTTLDLHGNKFTGPIPPDLGDLMQLEYFDVSNNKLSGEIPEKLCSLFNMLYLNLAKNSLEGPIPKSGICQNLSKSSFVGNKNLCGRIMGYNCKIKSMERSAVLNAWSVAGIIIVSVLIVFSVAFAMRKQIIRSHRDDDPEDMEESKLNSLMDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSQAKTQGHREFMAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTSALEVLNWETRFKVASGAACGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVGDFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTAKGDVYSFGVILLELVTGKEPTGPEFKEIEGGNLVGWVFQKIKKGQAAEVLDVTVLNADSKHMMLQTLKIACVCLSENPANRPSMLQVFKFLKGIKLQ 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9702739 9706641 + CmaCh18G012350.1 Cma18g01235 314573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 624 924 IPR032675 -
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 213 364 IPR032675 -
Cma18g01235 1300 SUPERFAMILY L domain-like 639 914 - -
Cma18g01235 1300 Pfam Protein tyrosine and serine/threonine kinase 1026 1293 IPR001245 GO:0004672|GO:0006468
Cma18g01235 1300 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 144 212 IPR032675 -
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 404 - -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 285 618 - -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 368 748 - -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 319 - -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 739 1299 - -
Cma18g01235 1300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 630 795 - -
Cma18g01235 1300 Pfam Leucine Rich Repeat 756 776 IPR001611 GO:0005515
Cma18g01235 1300 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Cma18g01235 1300 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Cma18g01235 1300 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515
Cma18g01235 1300 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Cma18g01235 1300 SUPERFAMILY RNI-like 68 363 - -
Cma18g01235 1300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 213 404 - -
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 285 618 - -
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 319 - -
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 368 748 - -
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 739 1299 - -
Cma18g01235 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 630 795 - -
Cma18g01235 1300 SMART LRR_typ_2 597 621 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 705 728 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 287 311 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 215 239 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 335 359 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 753 777 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 190 214 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 729 752 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 549 573 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 681 704 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 166 189 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 94 118 IPR003591 -
Cma18g01235 1300 SMART LRR_typ_2 827 851 IPR003591 -
Cma18g01235 1300 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Cma18g01235 1300 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524
Cma18g01235 1300 Gene3D Transferase(Phosphotransferase) domain 1 1098 1299 - -
Cma18g01235 1300 SMART serkin_6 1022 1294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 513 623 IPR032675 -
Cma18g01235 1300 Gene3D Ribonuclease Inhibitor 365 512 IPR032675 -
Cma18g01235 1300 PRINTS Leucine-rich repeat signature 681 694 - -
Cma18g01235 1300 PRINTS Leucine-rich repeat signature 218 231 - -
Cma18g01235 1300 SUPERFAMILY L domain-like 367 621 - -
Cma18g01235 1300 ProSiteProfiles Protein kinase domain profile. 1022 1300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01235 1300 SUPERFAMILY Protein kinase-like (PK-like) 1003 1294 IPR011009 -
Cma18g01235 1300 SMART LRR_sd22_2 573 596 - -
Cma18g01235 1300 SMART LRR_sd22_2 166 192 - -
Cma18g01235 1300 SMART LRR_sd22_2 94 120 - -
Cma18g01235 1300 SMART LRR_sd22_2 287 313 - -
Cma18g01235 1300 SMART LRR_sd22_2 851 877 - -
Cma18g01235 1300 SMART LRR_sd22_2 753 779 - -
Cma18g01235 1300 SMART LRR_sd22_2 681 696 - -
Cma18g01235 1300 SMART LRR_sd22_2 705 726 - -
Cma18g01235 1300 SMART LRR_sd22_2 215 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02456 Cma-Chr4:16889628 Cma18g01235 Cma-Chr18:9702739 9.75E-77 dispersed
Cma04g02741 Cma-Chr4:18437183 Cma18g01235 Cma-Chr18:9702739 4.62E-06 dispersed
Cma10g00470 Cma-Chr10:2125287 Cma18g01235 Cma-Chr18:9702739 1.52E-10 dispersed
Cma11g00462 Cma-Chr11:2247610 Cma18g01235 Cma-Chr18:9702739 1.63E-12 dispersed
Cma13g00597 Cma-Chr13:5881858 Cma18g01235 Cma-Chr18:9702739 3.28E-06 dispersed
Cma18g00421 Cma-Chr18:2311840 Cma18g01235 Cma-Chr18:9702739 3.59E-07 dispersed
Cma18g01235 Cma-Chr18:9702739 Cma17g00119 Cma-Chr17:598950 5.20E-34 dispersed
Cma08g00572 Cma-Chr8:3265075 Cma18g01235 Cma-Chr18:9702739 2.90E-15 transposed
Cma16g00404 Cma-Chr16:2006173 Cma18g01235 Cma-Chr18:9702739 4.02E-08 transposed
Cma16g00137 Cma-Chr16:601086 Cma18g01235 Cma-Chr18:9702739 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69319 PF07714 PK_Tyr_Ser-Thr 2.30E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01235 - - csv:101215443 2145.93