Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01236 ATGGAGGAGCCGACCGCCAAATCGGCGTCTGCTGGCGCCGATTCACCGAGATCTGTGCCCACTCCTTTCTTGTCCAAAACGTATCAGCTCGTTGATGACCAGACGGTCGACCATGTCATTTCGTGGAACGACGATGGCTCTACCTTCATCGTTTGGAACACCTTGGCTTTTGCTAGAGACTTGCTCCCCAAGCATTTCAAGCATAATAACTTCACTAGCTTCCTCCGCCAGCTCAATACTTATGGATTTCGAAAGGTTGTATCGGACCGGTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTATGTGAGATTCAGCGTAGGAAATTGACCACTCCGGTGCTGACCACTGCTTCTAACTCGGTTGTGTTGACAGCCGTTGGTGCTCCGGCGATTCCGTCTGCGCATCTATTGACGGGGAGTTCTTCCGGTGAAGAACAAGTGATTTCGTCGAATCTAACTCCGTCGAAAGATCTTGCGGAGCTGATTGATGAGAACGATAAGCTGAAAAAAGAGAAAGTTCGGCTGACGGAACAATTAACCGAGGTGAAATCCCTGTGCAACAATATCTTTTCCTTGATGTCGAGCTTCGTCGAAAACCAAGTGAAAAGCAGTTGCAAAGTTAGAGAGAGTGTTTTAACGTCGGCAAAATCGCTGGATCTTTTCCCGGTGAAGCGGCGTTCCGAAGAAGACGAAGCGGCAGAGGCCACGGAAGCGGAGACGTATCAGATCGGATCAAAGCGGCCTAGAGAATACAGGGAGGATGATACTACTCTGCGACTTCAACCACCGGAGAGACCGAAAGTGAAATCAGACCGGATAATTTGTGAACAGAAAGTTGATAATGAGAAAACGTGGCATAATCAGGTCCACTGA 888 48.99 MEEPTAKSASAGADSPRSVPTPFLSKTYQLVDDQTVDHVISWNDDGSTFIVWNTLAFARDLLPKHFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLTTPVLTTASNSVVLTAVGAPAIPSAHLLTGSSSGEEQVISSNLTPSKDLAELIDENDKLKKEKVRLTEQLTEVKSLCNNIFSLMSSFVENQVKSSCKVRESVLTSAKSLDLFPVKRRSEEDEAAEATEAETYQIGSKRPREYREDDTTLRLQPPERPKVKSDRIICEQKVDNEKTWHNQVH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9707338 9708594 - CmaCh18G012360.1 Cma18g01236 314574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01236 295 Coils Coil 163 190 - -
Cma18g01236 295 MobiDBLite consensus disorder prediction 231 278 - -
Cma18g01236 295 Gene3D - 16 113 IPR036388 -
Cma18g01236 295 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g01236 295 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 MobiDBLite consensus disorder prediction 248 278 - -
Cma18g01236 295 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma18g01236 295 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 7 288 - -
Cma18g01236 295 SUPERFAMILY Winged helix DNA-binding domain 20 112 IPR036390 -
Cma18g01236 295 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 288 IPR027725 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01236 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101217977 416.387
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01203 Cma18g01236 CCT
Cma16g00136 Cma18g01236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01203 Cma-Chr15:7620776 Cma18g01236 Cma-Chr18:9707338 1.02E-79 dispersed
Cma16g00136 Cma-Chr16:599420 Cma18g01236 Cma-Chr18:9707338 2.79E-140 wgd
Cma18g01236 Cma-Chr18:9707338 Cma02g01477 Cma-Chr2:8463688 2.71E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36838 PF00447 HSF_DNA-bind 1.90E-31 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01236 Cma_Chr18 FPKM 14.380622 17.05398 23.439152 24.734589 22.540672 15.878497 19.306717 40.347401 45.708931 43.028458