Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01238 ATGGCGTCGCACGTACAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAATACAGGAAAAACCACCATCCTACCGCCGTAAACAGGAATTTGCTTCTTCATGTCGGACTGTCTCTATCGCTTTCCTTTTTCATCATCTTCTTCAAGATCCCAACCCTCTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACGCCAGCAGTGGCGTCCGAGCTGCGATTAGAAGACCTGACGGCTCTAACTCCGGTTCTGGTCTAGAGGGCTACCGAAACTTGTCGTCAACGGGTGCCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGATAAGGAGAAGGTTGAGTTTGACGAAAGCAAGGCGCAGATCTTCAGGTTAAAGCTGGATGAGAATCATCTCCAAACGCGGATCTATTTCAAAGAATACAGAGATGGATTCACTTTTTCATTTGTCGGTATTTCTTGTTTACTGCTGCAATTTTTCTTGGGTGCATCTGAAGATTCTGGAGTTTGGGGAAATGGGATGTTTGTTCCTCTTCTTTTCGCCATCTTCGCTGGATGTAAGTTGTTTGTATCACTCGGTAAGGTTGCTTTGGAGAAATCTGCGTCTAGGTCGTTGGATAGGCAATTGAGCTTACTTTTTGGAGTTTGTGGGTTTCTTTTTGGACTTCTAACCTGTTCTTCGTTTAGCCCTTTTATATTGGATTTTGATCTTGATCAAATTAGTGGTTTGGGGACCTTTTTCGTTGCCATGTTAATGGGTTGCTTTTCGGGGTTTTTGTTTATACCTGCAACAAAAATCGCTCGCTGTTTTTGGCTTGGAACTGATCAAATTAGATGCAACTTGGAAATGGTTTATTGTGGGTGGTTTTCTCGGATGATTTTGTATGCCAGTCAGGTGACCTTGTTTTTCACCACTCTGCTTTGGATCAAACCATTAGCTGAAATTTTCATTAACAAGAACATTGGCGGAAGTGCAATTGAACATATGTTAAATGAAATCGAAAATGATGACAGATTGGCCGGAAATATAGGATTCTCAAAGGCTGATTTTGCCAAGCTTAGGCTCTGGTGTTTGGCACTGTGTGGTTTCTTGCAAATCATTGCTGTGAGGCAAAACTTACAAATGTATCTGAACGAAGCTCTGTTATCTTGGTATCAAAGACTGCATGCTGGGAAAGTTCCTGAATTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGGCTTCTTTGCAGTTTTTTGCTCCACCAGCCTTAGTTTTGCTTTTCTTTGGGTTATCTCAAATTAGTATCAGCTCTTTGGAAGGCACCAGCTTGGCTAGTTTTATTCTTTCCTGCTCTCCCTTAATAAAAAAAGTGCCTCTGTTAATGGCTTGGTGGATTGTCTCTGTTATGTCTATTTATACATCAGTCACCATCGTGCTATATCGTCGTGGTGTGCTGTATGTTTCTTGA 1605 42.99 MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAVNRNLLLHVGLSLSLSFFIIFFKIPTLFLHGIFTYIHPDNASSGVRAAIRRPDGSNSGSGLEGYRNLSSTGAAEIRKRTKSKDKEKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQFFLGASEDSGVWGNGMFVPLLFAIFAGCKLFVSLGKVALEKSASRSLDRQLSLLFGVCGFLFGLLTCSSFSPFILDFDLDQISGLGTFFVAMLMGCFSGFLFIPATKIARCFWLGTDQIRCNLEMVYCGWFSRMILYASQVTLFFTTLLWIKPLAEIFINKNIGGSAIEHMLNEIENDDRLAGNIGFSKADFAKLRLWCLALCGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPELDFSRAKVFLHNHYLCVASLQFFAPPALVLLFFGLSQISISSLEGTSLASFILSCSPLIKKVPLLMAWWIVSVMSIYTSVTIVLYRRGVLYVS 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9710564 9714600 - CmaCh18G012380.1 Cma18g01238 314576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01238 534 PANTHER RE42071P 75 534 IPR019395 -
Cma18g01238 534 Pfam Predicted transmembrane protein 161AB 292 477 IPR019395 -
Cma18g01238 534 PANTHER RE42071P 75 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01238 - - - cmax:111467665 898.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00135 Cma-Chr16:597497 Cma18g01238 Cma-Chr18:9710564 8.94E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01238 Cma_Chr18 FPKM 12.376392 11.844942 20.236643 20.995584 17.748245 12.722889 19.671648 16.566803 16.813091 20.034687