Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01244 ATGGTGAAGCTGACAATGGTTGGAAGGGTTAGGGATGGAGTGCCACTTGCACAAGGCATTAGGTATGTCAATGAAGAGAATGATGATGTTTTGGGGTACAAACAGCAAGCTGAGTTCATACTCAAAGAGATCTCTAGAGGGGCTTTGTCATCTCCAAAAATGGCCATTCAGATGCACCATCACTCTTTCATTTACTTGATCGAGAACGGAGTGTGTTACATGACATTATGCGATTCTTTATACCCAAGAAAGCTGGCTATCCATTACTTGCAAGATCTGCAAAGGGAGTTTTCCAAGTTTGATGATGCCCTACTAAACAGCCTTGTCAAACCCTATAGTTTCCCCAAATTTGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGTCAATCTATACAAGCTCAATGATAGCCGTAGCCAAACTGATCTAGACATAGTCACTTGCTCGATCTCTGAAATTTTTGAAAGAAGGAGAAAGATAACGGATATGGTGGAAAGATCAATTTGTAATGCAAATTCCTCATCCATTTGGAGCTTTTCATTTGTCAAGGAAATTGGCTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCATTAA 714 37.96 MVKLTMVGRVRDGVPLAQGIRYVNEENDDVLGYKQQAEFILKEISRGALSSPKMAIQMHHHSFIYLIENGVCYMTLCDSLYPRKLAIHYLQDLQREFSKFDDALLNSLVKPYSFPKFDNIISNIRKRYIDTRTQVNLYKLNDSRSQTDLDIVTCSISEIFERRRKITDMVERSICNANSSSIWSFSFVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9730202 9731750 - CmaCh18G012440.1 Cma18g01244 314582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01244 237 SMART Longin_2 36 120 IPR010908 -
Cma18g01244 237 Pfam Regulated-SNARE-like domain 37 119 IPR010908 -
Cma18g01244 237 CDD Longin 5 128 IPR010908 -
Cma18g01244 237 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Cma18g01244 237 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Cma18g01244 237 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 217 IPR044565 GO:0005484|GO:0006888|GO:0006890
Cma18g01244 237 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 217 - -
Cma18g01244 237 Gene3D Longin domain 1 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01244 K08517 SEC22; vesicle transport protein SEC22 - csv:101213515 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00814 Cma-Chr8:4921242 Cma18g01244 Cma-Chr18:9730202 5.76E-41 dispersed
Cma14g01204 Cma-Chr14:9629349 Cma18g01244 Cma-Chr18:9730202 1.28E-06 dispersed
Cma18g01244 Cma-Chr18:9730202 Cma17g00670 Cma-Chr17:5604526 2.39E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g659 . . . . . . . . . Cmo18g01267 . . . . Sed13g0120 . . Bhi01g01324 Tan01g0257 Cmetu06g1462 . Hepe07g0162 Mch10g0159 . . . . . . . . . . . . . . . Cme06g00993 . . . . . . . . . . . . Cma18g01244 . Car18g01150 . . . . . . . . . Cla05g00877 Cam05g0965 . Cco05g0969 Clacu05g0953 Cmu05g0909 Cre05g0993 . Csa03g01707 Chy06g00943 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013964 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01244 Cma_Chr18 FPKM 0.67929 0.0 0.0 0.237699 0.0 0.0 0.304988 0.755648 0.457184 0.607145