Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01245 ATGGCTGACGATGAGCCCAAGAAGCTGGAATCTGAACCTCCTTCCGAGCCCTCTCCGCCGCAAGCGGCGGAGCTCGTGGAGGAGCCGACTAAAAACGTGGCGGAGGAGAAATCAATCATCCAGTTAACCCCACCGGAGAAGACGCCGGCTGATGACTCCAAACCTCTGCTTATCTTTGAAAAGACTGAAGCAAAAACAGAGGAGAAACAGAGTAGCTCAATTAATAGAGATGCTGAGCTTGCAAGAGTAGCAACAGAGAAGAGACTGACACTCATTAAAGCTTGGGAAGAGAGTGAAAAATCAAGAACAGAGAACAGAGCTCACAAAAAACTATCAGAAATTGGGTCATGGGAGAGCAGCAAGAAAGCGGCGGTGGAGGCTGAGCTGAAACAGATCGAGGAAAAGTTTGAGAAGAAGAAAGCGGAATATGTTGAGAAAATGAAGAACAAAATAGCGTTGATTCATAAAGCAGCAGAAGAGAAGAAGGCAGTGATTGAAGCGAAACGTGGAGAAGAGAAGCTTAAAGCAGAGGAAATTGCTGCAAAATACAGAGCCACTGGAACTGCTCCAAAGAAGATTCTTGGTTGTTTCTAA 594 45.96 MADDEPKKLESEPPSEPSPPQAAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIFEKTEAKTEEKQSSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSWESSKKAAVEAELKQIEEKFEKKKAEYVEKMKNKIALIHKAAEEKKAVIEAKRGEEKLKAEEIAAKYRATGTAPKKILGCF 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9731835 9733066 - CmaCh18G012450.1 Cma18g01245 314583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01245 197 PANTHER OS02G0117200 PROTEIN 1 197 - -
Cma18g01245 197 Pfam Remorin, C-terminal region 87 192 IPR005516 -
Cma18g01245 197 Coils Coil 122 149 - -
Cma18g01245 197 PANTHER REMORIN 1.4 1 197 - -
Cma18g01245 197 Pfam Remorin, N-terminal region 31 83 IPR005518 -
Cma18g01245 197 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01245 - - - bhj:120068231 265.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01062 Cma18g01245 CCT
Cma02g01062 Cma18g01245 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01245 Cma-Chr18:9731835 Cma19g00418 Cma-Chr19:5040692 2.08E-62 dispersed
Cma14g02029 Cma-Chr14:14169096 Cma18g01245 Cma-Chr18:9731835 8.86E-49 wgd
Cma18g01245 Cma-Chr18:9731835 Cma02g01062 Cma-Chr2:6342177 4.76E-70 wgd
Cma18g01245 Cma-Chr18:9731835 Cma02g01472 Cma-Chr2:8437165 3.56E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g661 Blo06g01117 . Bda05g00072 . Bpe03g00289 . . Bma14g02086 . Cmo18g01268 Cma02g01062 . Car02g00805 . . Cpe05g00657 . Bhi01g01322 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Cone1ag1155 Cone5ag0865 Cone14ag0091 Cone15ag0097 Lsi05g01228 Csa05g00303 Chy09g01204 Cme06g00994 Blo07g00413 Blo09g00109 . . . Bpe12g00425 Bma08g00336 . . Cmo02g01079 . . Cma18g01245 . Car18g01151 Cpe09g00093 . Bhi12g00225 . . Lac11g2116 Hepe06g1565 . Lcy12g1673 Cla05g00878 Cam05g0966 Cec05g0970 Cco05g0970 Clacu05g0954 Cmu05g0910 Cre05g0994 . . Chy06g00944 Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01245 Cma_Chr18 FPKM 0.0 1.202816 51.672703 52.466114 0.537603 0.0 0.0 186.736343 207.755203 198.640091