Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01247 ATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCGCTTGGGTTTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAGTCTCCGGCGAGATTCTCTCTCATTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATACGGCAGGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCCAAAATGCCACTCCGTCGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAGCGTGAAGCGCGGTGTCTGCCCTGCCAGCTACCCGACCAATTGGACATTGGAGGAAGATCCGAATCATCCAGAACCAATGACGTGTCCGGATTACTTCCGTTGGATTCACGAGGACCTGAGACCGTGGGCCCGGACGGGGATCACGAGGGCCACGATGGAGGCTGGCCAACGGACGGCGAATTTCCGGCTGGCGATAGTGAACGGGAAGGCTTACGTGAAAACTTATCGGAAGTCGTTTCAGACGAGAGATACTTTTACGGTGTGGGGGATCCTACAGTTGCTACGGAGGTACCCTGGGAAAGTGCCTGATTTGGAGCTGATGTTTGATTGTGTTGACTGGCCTGTGATTTTGACTTCTCATTTTAGTGGGCCTAATGGGCCGGCCCCACCTCCTTTGTTTCGTTATTGTGGAGATGATGCCACGTTGGATATTGTTTTTCCTGATTGGTCCTTCTGGGGTTGGCCAGAAATCAATATAAAGCCATGGGAGCCATTGTTGAAGGACCTAATAGAAGGGAACAAAAAGATCCCATGGAAGAGTAGAGAGCCTTATGCTTATTGGAAGGGAAATCCGGAGGTTGCCGAAACCCGAAAAGATCTACTTAAATGCAATGTCTCCGACCAACAAGATTGGAATGCTCGTGTATTCACTCAGGATTGGATGAAAGAATCCCAGCAAGGATACAAGCAATCAGATCTTGCAAAGCAATGTGTTCATAAGTACAAAATCTATATTGAAGGATCAGCTTGGTCTGTTAGTGAAAAATACATTCTTGCTTGCGATTCCGTTACATTACTTGTAAAACCGCGCTACTACGACTTCTTCACACGAGGTCTAATACCGATGCATCACTATTGGCCCGTCAAGAACGACGACAAGTGCCGGTCTATCAAATTTGCAGTTGATTGGGGCAACAGCCATCAGCAAAGGGCGCAGGCCATTGGCAAGGCAGCAGCCAGTTTCATCCAAGAGGAGCTGAAAATGGAGTATGTATATGACTACATGTTTCATCTCCTAACACAATACTCTAAACTTCTAACATTCAAGCCAACGATACCGCCCGACGCGATCGAGCTTTGTTCCGAGGCCATGGCTTGTCCAGCTCAAGGGCTCACTCAAGAATCCATGACAGAATCGTTGGTGGAGAGCCCTGCAGAGACAAGCCCCTGCACTCTGCCGCCGCCATATGATCCGGCATCGCTTCTTTTTGTTCATAGTACAAAACAGAGTTCAATCAAACAAGTGGAACAGTGGGAGACAACTAAAAGTAAGCAGCCATAG 1569 48.76 MRDAGFHQRFSNYAAWVSRHFSDHLLKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSNTAGGNFRGSNNTSQIPKMPLRRRQVEFPLDCTSFNSVKRGVCPASYPTNWTLEEDPNHPEPMTCPDYFRWIHEDLRPWARTGITRATMEAGQRTANFRLAIVNGKAYVKTYRKSFQTRDTFTVWGILQLLRRYPGKVPDLELMFDCVDWPVILTSHFSGPNGPAPPPLFRYCGDDATLDIVFPDWSFWGWPEINIKPWEPLLKDLIEGNKKIPWKSREPYAYWKGNPEVAETRKDLLKCNVSDQQDWNARVFTQDWMKESQQGYKQSDLAKQCVHKYKIYIEGSAWSVSEKYILACDSVTLLVKPRYYDFFTRGLIPMHHYWPVKNDDKCRSIKFAVDWGNSHQQRAQAIGKAAASFIQEELKMEYVYDYMFHLLTQYSKLLTFKPTIPPDAIELCSEAMACPAQGLTQESMTESLVESPAETSPCTLPPPYDPASLLFVHSTKQSSIKQVEQWETTKSKQP 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9737142 9739755 + CmaCh18G012470.1 Cma18g01247 314585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01247 522 MobiDBLite consensus disorder prediction 471 490 - -
Cma18g01247 522 Pfam Glycosyl transferase family 90 122 515 IPR006598 -
Cma18g01247 522 PANTHER MOTIF-CONTAINING PROTEIN 1, PUTATIVE-RELATED 27 517 - -
Cma18g01247 522 SMART cap10 196 445 IPR006598 -
Cma18g01247 522 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 27 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01247 - - - bhj:120086310 883.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00126 Cma18g01247 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00128 Cma-Chr16:579549 Cma18g01247 Cma-Chr18:9737142 4.80E-41 dispersed
Cma16g00129 Cma-Chr16:580240 Cma18g01247 Cma-Chr18:9737142 1.90E-51 dispersed
Cma13g00065 Cma-Chr13:536460 Cma18g01247 Cma-Chr18:9737142 7.46E-133 transposed
Cma16g00126 Cma-Chr16:573031 Cma18g01247 Cma-Chr18:9737142 0 wgd
Cma18g01247 Cma-Chr18:9737142 Cma08g00914 Cma-Chr8:5694732 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g671 . . . . Bpe03g00287 . Bma10g01223 . Cmo16g00132 Cmo18g01270 . . . . Sed13g0125 . . Bhi01g01320 Tan01g0251 Cmetu09g0720 . Hepe07g0158 Mch10g0154 . . . . . . . . . . . Cone15ag0089 Lsi05g01226 . . . Blo07g00411 Blo09g00111 . . . . . . . . . Cma16g00126 Cma18g01247 . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 . . . . . . . . . Chy06g00947 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01247 Cma_Chr18 FPKM 0.787188 0.244416 0.710633 0.969813 3.027276 3.420685 3.011346 0.654803 0.620781 0.782608