Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01248 ATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACACCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCAAAAGATCCGGAGAAGAAGAAGAAGAAGAGTGAATTCAAGCGCAAAAAGGGAGAATCGGATTCAAGGAACGACCCGAATAAACCACACAAAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTACTTTGCCGGAGACGAGGCCACAGCCTCAAGAACTGCCCCGACAAAACTGAAGACACAGTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTAGCTAATTGTCCACAACCTCTTCAACATGGGGGAACTAAATATGCCAATTGCTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAACTGCCCAAAGAATACTCATGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACCCAAGTTTATGCTGGGCCTGCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACGAGGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAATAAAAAGGGTCCCAAAGTTGCGAACGCGGCATCTGGAATGGTTGTGAGAGATGAGTGCAAGCTCAAGTTTTTGGAGTTAAAAACAAAGAGGAACTATCGTTTCATTATATTTAAGATCGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGAAGCCCTACAGAAACCTATGACGATTTCACTGCTGCTATTCCTCCTAACGAGTGTCGTTATGCTGTCTTTGATTTTGACTTCACCACCGACGAGAACTGCCAGAAAAGCAAGATCTTCTTCATAGCATGGTCACCCGACACATCGATCGTGCGAAATAAGATGGTGTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGGATTCAGGTGGAATTGCAAGCCACTGATGCAAGCGAAATGAGCTTCGACATAATCAAAGCTCGAGCCTTTTAA 1173 44.5 MVSRRQKLARKKYREEHPELFPKAEPTPPKDPEKKKKKSEFKRKKGESDSRNDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKICLLCRRRGHSLKNCPDKTEDTVDKKLCYNCGETGHSLANCPQPLQHGGTKYANCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVYAGPASGYVEMSRRPETRLVSGDDLEDDFMVEEDNLQIKDAKLGNKKGPKVANAASGMVVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPTETYDDFTAAIPPNECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQVELQATDASEMSFDIIKARAF 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9739710 9745355 - CmaCh18G012480.1 Cma18g01248 314586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01248 390 SUPERFAMILY Retrovirus zinc finger-like domains 71 119 IPR036875 GO:0003676|GO:0008270
Cma18g01248 390 Gene3D - 124 150 - -
Cma18g01248 390 Pfam Zinc knuckle 101 117 IPR025836 -
Cma18g01248 390 Pfam Zinc knuckle 182 198 IPR025836 -
Cma18g01248 390 SUPERFAMILY Actin depolymerizing proteins 254 388 - -
Cma18g01248 390 SUPERFAMILY Retrovirus zinc finger-like domains 123 173 IPR036875 GO:0003676|GO:0008270
Cma18g01248 390 MobiDBLite consensus disorder prediction 1 69 - -
Cma18g01248 390 Gene3D Severin 250 389 IPR029006 -
Cma18g01248 390 ProSiteProfiles ADF-H domain profile. 259 390 IPR002108 GO:0003779
Cma18g01248 390 CDD ADF_cofilin_like 259 389 IPR017904 GO:0015629|GO:0030042
Cma18g01248 390 PANTHER OS04G0555800 PROTEIN 1 256 - -
Cma18g01248 390 SMART adf_2 265 390 IPR002108 GO:0003779
Cma18g01248 390 ProSiteProfiles Zinc finger CCHC-type profile. 183 198 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 Gene3D - 151 208 - -
Cma18g01248 390 Gene3D - 70 123 - -
Cma18g01248 390 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 SMART c2hcfinal6 77 93 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 SMART c2hcfinal6 102 118 IPR001878 GO:0003676|GO:0008270
Cma18g01248 390 MobiDBLite consensus disorder prediction 12 56 - -
Cma18g01248 390 Pfam Cofilin/tropomyosin-type actin-binding protein 267 387 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01248 - - - cmo:103484078 676.011
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00124 Cma18g01248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00336 Cma-Chr10:1559743 Cma18g01248 Cma-Chr18:9739710 4.85E-10 dispersed
Cma11g01078 Cma-Chr11:5901391 Cma18g01248 Cma-Chr18:9739710 2.30E-07 dispersed
Cma16g00125 Cma-Chr16:572213 Cma18g01248 Cma-Chr18:9739710 1.53E-87 dispersed
Cma16g01239 Cma-Chr16:9367876 Cma18g01248 Cma-Chr18:9739710 1.26E-08 dispersed
Cma18g01248 Cma-Chr18:9739710 Cma03g00439 Cma-Chr3:4594431 4.89E-72 dispersed
Cma19g00691 Cma-Chr19:7144349 Cma18g01248 Cma-Chr18:9739710 5.42E-10 dispersed
Cma14g02030 Cma-Chr14:14173844 Cma18g01248 Cma-Chr18:9739710 4.57E-76 wgd
Cma15g01098 Cma-Chr15:6991309 Cma18g01248 Cma-Chr18:9739710 1.58E-79 wgd
Cma16g00124 Cma-Chr16:569503 Cma18g01248 Cma-Chr18:9739710 4.59E-144 wgd
Cma18g01248 Cma-Chr18:9739710 Cma02g01068 Cma-Chr2:6363850 1.57E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01248 Cma_Chr18 FPKM 2.429872 3.339637 3.92496 3.305015 8.332976 7.415833 9.438549 5.990714 5.92628 5.322471