Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01250 ATGGTGGCAATTAGTCTCTCCATTGGGTTAATTACATGGGTTTTAATTATGGTTTTGTTCGTGAAAGTGGTGGTTTCATGGTGGGTTTTGCCTGTTTTGGCTCATCAAAAGTTGAAGCGTAATGGGTTTCGAGGTCCTCCTCCAACCTTTCCTCTTGGAAACATTGCTGAGATGAAGAGGATAAGGAAAGCTTCCGCCGCCATTAATGGCGATTCCCACTCCTTCCCTTCTTCCAAGGTCTCCCATGATATTCATTCCACTGTTTTCCCTCACTTCGCTCAATGGCAGGCCTCTTATGGGAAGAAGTTTGTATATTGGTTGGGGACAGAGCCATTTTTATACATTGCAGACCCACACTTTATGAAGCAGATTTCTGTAGCTGTGATGGCAAAGGGTTGGGGGAAGCCAGCCGTGTTCAGGAACGATAGAAGACCGATGTTCGGTGATGGCCTTGTCATGACCGAAGGCGACGTCTGGGTTCGCCATCGACACATTCTTACTCCCGCTTTCAACCCCGCTAACTTGAAGGCAATGACAAAGTTCATGGTGGAGTCCACCACTAAAATGCTAAACGAGTGGAGCAGCCTCGTAAACTCCGCCAGTGGCGAAATCGACGTGGAGAGAGAAATCACGGCCACCGCCGGCGACATTATTGCAAAGGCCAGCTTCGGAATTTGCAACGGTGGCGGCCGAGACGCCTTCGACTACCTCAGAGCTCTTCAGTTCACTCTCTTCCAAAACAGTACTTACGTGGGCGTTCCTTTCAGCAGCCTTTTTTTCTGCCCGGGCCGAACCCTAGCCGCCAAGCGACTTGGCGCTGCAATTGACCGCCTCTTTTTATCCTTAGTGTCGGAGAGGAAACTGTCGCAGAATTCCTCCTCTGATTTGCTCAGCCGCTTGATTGAGGGTCAGAAGAGCACCGGCGACGTCGGCAAGATGGGGCTGACGACAAGAGAATTGGTGGACGAGTGCAAGACTTTCTTCTTTGGCGGCCATGAGACGACGGCACTGGCGACTAGTTGGACACTCCTGCTTCTGGCAACGCGGCCGGAGTGGCAAGATATTTTACGAGAGGAAATCAAAGAGGTTATTGGAGATAAGGAAATTGATTTCAACATGCTTTCTGGACTCAAAAAGATGGGATGCGTCTTCAGTGAAGTACTTAGGCTATACCCATCAGCTCCTAACATACAAAGACAAGCAAAAGGAGACATTGAAGTTGGGAGCATGACCATCCCAAAAGGGACCAACATATGGATAGACATCGTCGCAATGCATCGCGACCCGGATCTATGGGGCGATGACGCAAATGAGTTCAAGCCAGAGCGGTTCGTGGAGGACAGCATTCGTGGCGGGTGCAACCACAAGATGGGATATTTGCCATTTGGATTTGGAGGGAGAATGTGCATTGGCAAAAGCTTGTCCTCTATGGAGTACAAGATTGTGTTAACGCTAATTCTCTCTAGGTTTTCACTCTCTCTGTCTCCTAATTATTCTCATTCTCCTGCAACTTTGCTCTCTTTAAGACCTGCCCATGGCCTTCCTCTCATTGTAACCCCCCTTCACCCTTAA 1572 49.17 MVAISLSIGLITWVLIMVLFVKVVVSWWVLPVLAHQKLKRNGFRGPPPTFPLGNIAEMKRIRKASAAINGDSHSFPSSKVSHDIHSTVFPHFAQWQASYGKKFVYWLGTEPFLYIADPHFMKQISVAVMAKGWGKPAVFRNDRRPMFGDGLVMTEGDVWVRHRHILTPAFNPANLKAMTKFMVESTTKMLNEWSSLVNSASGEIDVEREITATAGDIIAKASFGICNGGGRDAFDYLRALQFTLFQNSTYVGVPFSSLFFCPGRTLAAKRLGAAIDRLFLSLVSERKLSQNSSSDLLSRLIEGQKSTGDVGKMGLTTRELVDECKTFFFGGHETTALATSWTLLLLATRPEWQDILREEIKEVIGDKEIDFNMLSGLKKMGCVFSEVLRLYPSAPNIQRQAKGDIEVGSMTIPKGTNIWIDIVAMHRDPDLWGDDANEFKPERFVEDSIRGGCNHKMGYLPFGFGGRMCIGKSLSSMEYKIVLTLILSRFSLSLSPNYSHSPATLLSLRPAHGLPLIVTPLHP 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9757329 9760020 + CmaCh18G012500.1 Cma18g01250 314588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01250 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Cma18g01250 523 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 12 517 - -
Cma18g01250 523 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PANTHER CYTOCHROME P450 FAMILY MEMBER 12 517 - -
Cma18g01250 523 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 Gene3D Cytochrome P450 29 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 Pfam Cytochrome P450 89 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g01250 523 SUPERFAMILY Cytochrome P450 86 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01069 Cma18g01250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01250 Cma-Chr18:9757329 Cma15g00184 Cma-Chr15:848309 7.27E-101 dispersed
Cma18g01250 Cma-Chr18:9757329 Cma02g01069 Cma-Chr2:6366480 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01250 - - csv:101220942 768.459