Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01252 ATGGAGCCTTTGTGGAAACTTCTATATCTGCTGGAACCTGCACCTGTCACTCTTATTCTGACTGCGGTGGCTGTTACATTTGGATCTGCTTTCCGGGCCCTAAATTATGGAAAGGAAATGGAGAGAAACCATGACTTTTCAGAAGCATCCATTACCTTAGACAGATCCCAAGCGTTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCCATGTCTCAACTTCTTACTGCATTCACAACTGTTGCTTCTGTTTCATCCCTCTTCTTCTGTTTAGCTCCCTACATGGCCTACTTAAAGTCCCAGTTTGGATTGGCTGATCCTTATGTATCGAGGTGTTGTTCCAAGTCATTTACACGAATTCAAGGGTTATTATTGTTGGTATGTTCTGGTTTAGTTGCAGCTTGGCTTGTTTCTGGGCATTGGATTTTGAACAATTTGTTAGGAATTTCAATATGTGTTGCGTTTGTCAGCCATGTTCGTCTCCCTAATGTTAAAGTATGTGCAATGCTTCTCGTTTGTCTCTTTGTATATGATATATTCTGGGTCTTCTTCTCTGAGAGATTCTTCGGGGCAAATGTAATGGTATCTGTAGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCTAATAGTCTGAGTCTTCCTGGTTTGCAATTGATAACTAAGAAGCTCGAGTTACCCGTCAAGATAGTCTTTCCCAGGAACTTACTTGGTGGAGTCATTCCAGGAAAACATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTTGTTTCGACCATCGGAAAAGTAGGGATACAGTCAATCTCTTAGATATCCACACAAGGGGCGGCCACAAGTATATTTGGTATGCCCTACCTGGGTATGCCATTGGGCTGGTGACTGCTCTAGCTGCCGGCGTCTTGACTCACTCACCGCAACCTGCTTTATTGTATCTGGTACCTTCTACATTAGGACCTGTTATAGCCATCTCTTGGATGAGGAAGGATTTTTTGGAGTTATGGGAAGGTTTTTTCATGGCTTCCACTCCTTCCACATGTTCCCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTTCGCCAAATTCCCTCTCGTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCGGGTGATTTGCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGGATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTAAACTTGCGGAGAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAACTGTTCCAAACAAAAGGCACAAATGGAGGCCTTAAGTACGCACCAAGAATTATTGTTGGACTCTGATTCTGGAAATGATAAGCTTGGTGAAGATCAAAAAGAAGATAACAGTGTCAATGCAGATGATGATAATCATGAGGAATTTTCTTCATATACAGAAAATGATGAAACTCTCAACAAAAATCGAGTTGGTGCCGTTGCTGATGTCGAGGAGTTTTCAGGACATGATGTTGAATTTTCATCCAATAATGATAATGTCAATAATGTTGCTTTCTTGCAAGAAGATATCCAATCTGATTCCTCGTTAGCTGTTACGTTGGTTGCTTATGGAAGTTCTGAGATCGATTTGGACATTGATTCTGGTTCTAAAGATGTAAATTCTGGTACAGAAGTGTTAACTTCTGAACCTGAAATGAATGATGAACCGGATAACTCGCCTGAAACGAGTGAAAAGTATGATTTCAGCTCTGAAAAGTTACCAGTCTATGATGATAGTTCATCAAATTATAATTCTGGCTACCAGGATGAGACAGCTGATCCTCCTGTAAATGAAATCGACGATTCTTCATTGCATGAATTTTCTAACAAACCTGGTGATGCAGCTAAGGAATTGGGATTAGTTGAAAAAGAGGCCGTGACCGAATCATTGGAAGGAGTTCTTAACCCTGGCAAAACCGAACGGCTCTTATCTGAGGAAACTGCATCGACCATAGAACAGAAAATAGGAAGAGGGTTGTCCAAAGCTGCGTTTGTCTCTGTCACAGCTTATCCACTGGCAGATGATCAAGAACAAAATCATGAAACAACCATGAATAGTTATGCTGCCGAACCGGAACTACAAGGGAATTTATTTTCTTCTGCAGGTGTTCCTGCTCCTCTGGTTTCTGCAGCTGTTAAGACACTTCCTGGCAAGGTTCTAGTTCCTGCAGTTGTGGATCAGGTTCAGGGGCAGGCCTTGGCAGCACTGCAAGTTTTAAAGGTGATTGAGTCTGAAGTTGAGCCGAGTGGTCTATGTACTCGTCGGGAATATGCTCGTTGGCTAGTGTCTGCAAGCTGTGCACTTTCAAGGAACACTGCATCTAAAGTATACCCAGCAATGTATATAGAGAATGTTACCGAGCTTGCTTTTGATGATATTACTCCTGAAGATCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTCTTTCTTCATTGGACGATGACGAGGGTCCTTTTTATTTCTCTCCCGAAAGCCCGCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTAGAAAAAAGACAGCTACCTGAGGCAGATAGGAAGACGCTCCACCAAGTTTCTGGATTTATCGATACCGATAAGATCCATCCAGATGCTTGTCCTGCGCTAGTTGCTGATCTTTCTGTAGGCGAACATGGAATAATCGCTCTTGCATTTGGATACACAAGGCTATTCCAGCCGGATAAACCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATCGTAAGCGAGGAGCTTGCAAGGATTGAAGCCGAGTCAATGGCGGAAAACGCTGTGGCTGCACACAGTGCTTTGGTTGCTCAAGTTGAGAAAGATATTAACGCCAGCTTCGAGAAAGAACTTTCCATCGAAAGGGAAAAGGCTGACGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATATGAAAAAGAGAGAGATAATATCGCCTTGATGAGGGAACGTGCTGCTATTGAATCGGAAATGGAAGTACTTTCGAGGTTAAGAAATGAGTTGGAGGAGCAGTTGCAAGGCCTGATGAGTAATAAAGTAGAGGTATCTTATGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCTTGCAATATGAGCTTGAGGTTGAGAGAAAGGCGTTGTCCATGGCCAGATCTTGGGCGGAGGAAGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTAGAGGAGGCAAGAGATCGCTGGGAAAAGCGGGGCATCAAAGTAGTCGTCGACAGTGATCTCCGTGAACAGGAATCTGCTGGAGATACTTGGCTCGATTCCAGCAAACAGTTTGCAGTGGAGGAAACTGTTGATAGGGCCGAGAACTTAATGGACAAGCTTAAAGGAATGGCTACAGAAGTAAGAGGGAAATCCAAAGACATAATTGAGATGATCATCCAGAAGATAGCTCTGCTGATATCAAACTTGAGACAATGGGTTCGGAATGCTGGTGAGAAGGCTGAAGATGTAAAGAATGTGGCCATCGCAAGGGCAAGTAGATCGGCAACTGAACTGCAACAGAGCAGTGCAGAGATGGGGTTGGCCCTGAAGGAGGGAGCTAAGCGAGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTTCCCAAAAGTTCAGAACATCCTTCGCTTGCCTCCGATCACTTGGTTCTAGTCCGTCCGAGAAGGCAATGGCTCCGAAGCATCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGCCCTTCTGATCGTAAAGGAAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGA 4329 44.26 MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNHDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSMSQLLTAFTTVASVSSLFFCLAPYMAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLVCSGLVAAWLVSGHWILNNLLGISICVAFVSHVRLPNVKVCAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKHATDFMMLGLGDMAIPAMFLALVLCFDHRKSRDTVNLLDIHTRGGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWMRKDFLELWEGFFMASTPSTCSPNSLQLRLALNCKNFAKFPLVPVRATVRKLDPRLRVICRPIVHNSAKIARTNGLRRDGICFAGSDSKADGFSGWSESDSGEEDLNLRRKNWLAGLVGIGITGFILVSGITFAAWSINKQNCSKQKAQMEALSTHQELLLDSDSGNDKLGEDQKEDNSVNADDDNHEEFSSYTENDETLNKNRVGAVADVEEFSGHDVEFSSNNDNVNNVAFLQEDIQSDSSLAVTLVAYGSSEIDLDIDSGSKDVNSGTEVLTSEPEMNDEPDNSPETSEKYDFSSEKLPVYDDSSSNYNSGYQDETADPPVNEIDDSSLHEFSNKPGDAAKELGLVEKEAVTESLEGVLNPGKTERLLSEETASTIEQKIGRGLSKAAFVSVTAYPLADDQEQNHETTMNSYAAEPELQGNLFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIESEVEPSGLCTRREYARWLVSASCALSRNTASKVYPAMYIENVTELAFDDITPEDPDFASIQGLAEAGLISSKLSRHDILSSLDDDEGPFYFSPESPLSRQDLVSWKMALEKRQLPEADRKTLHQVSGFIDTDKIHPDACPALVADLSVGEHGIIALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKADAVEKMAEEAKQELERLRYEKERDNIALMRERAAIESEMEVLSRLRNELEEQLQGLMSNKVEVSYEKERINKLRKEAEIENQEISRLQYELEVERKALSMARSWAEEEAKRAREQAKALEEARDRWEKRGIKVVVDSDLREQESAGDTWLDSSKQFAVEETVDRAENLMDKLKGMATEVRGKSKDIIEMIIQKIALLISNLRQWVRNAGEKAEDVKNVAIARASRSATELQQSSAEMGLALKEGAKRVVGDCREGVEKISQKFRTSFACLRSLGSSPSEKAMAPKHPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9766061 9779309 + CmaCh18G012520.1 Cma18g01252 314590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01252 1442 ProSitePatterns Ribosomal protein L36e signature. 1387 1397 IPR000509 GO:0003735|GO:0005840|GO:0006412
Cma18g01252 1442 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 360 1316 - -
Cma18g01252 1442 Coils Coil 1044 1141 - -
Cma18g01252 1442 Pfam Signal peptide peptidase 50 356 IPR007369 GO:0004190|GO:0016021
Cma18g01252 1442 MobiDBLite consensus disorder prediction 1411 1442 - -
Cma18g01252 1442 Pfam Ribosomal protein L36e 1340 1433 IPR000509 GO:0003735|GO:0005840|GO:0006412
Cma18g01252 1442 MobiDBLite consensus disorder prediction 632 646 - -
Cma18g01252 1442 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 360 1316 - -
Cma18g01252 1442 Coils Coil 1153 1180 - -
Cma18g01252 1442 MobiDBLite consensus disorder prediction 1419 1442 - -
Cma18g01252 1442 Coils Coil 1209 1229 - -
Cma18g01252 1442 SMART psh_8 49 348 IPR006639 GO:0004190|GO:0016021
Cma18g01252 1442 Gene3D 60S ribosomal protein L36 1332 1437 IPR038097 -
Cma18g01252 1442 MobiDBLite consensus disorder prediction 604 666 - -
Cma18g01252 1442 MobiDBLite consensus disorder prediction 648 665 - -
Cma18g01252 1442 MobiDBLite consensus disorder prediction 509 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01252 - - - mcha:111011467 1449.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01598 Cma-Chr1:11027915 Cma18g01252 Cma-Chr18:9766061 3.98E-27 dispersed
Cma09g00551 Cma-Chr9:2495314 Cma18g01252 Cma-Chr18:9766061 1.57E-28 dispersed
Cma16g00118 Cma-Chr16:546752 Cma18g01252 Cma-Chr18:9766061 1.95E-30 dispersed
Cma17g00570 Cma-Chr17:4659953 Cma18g01252 Cma-Chr18:9766061 6.68E-26 dispersed
Cma04g01542 Cma-Chr4:7817257 Cma18g01252 Cma-Chr18:9766061 1.80E-67 transposed
Cma15g01234 Cma-Chr15:7815763 Cma18g01252 Cma-Chr18:9766061 6.76E-22 wgd
Cma15g01095 Cma-Chr15:6959433 Cma18g01252 Cma-Chr18:9766061 1.50E-59 wgd
Cma16g00117 Cma-Chr16:529363 Cma18g01252 Cma-Chr18:9766061 0 wgd
Cma18g01252 Cma-Chr18:9766061 Cma02g01070 Cma-Chr2:6369886 3.02E-60 wgd
Cma18g01252 Cma-Chr18:9766061 Cma08g00905 Cma-Chr8:5613224 5.49E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011727 2 3 1 1 1 0 3 0 1 0 0 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 0 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01252 Cma_Chr18 FPKM 34.692368 41.790627 43.361538 44.782753 59.430325 53.216534 58.945881 66.378708 67.507019 66.997223