Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01255 ATGCAGCACTCTATTGCAGTCAATATCTTGATGCCAGTTGCAAAACTCAAGAATTCTAACTATCCAGATGTGATGAAATCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATTGGCAAAGAGCCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGCCCAGTCCAGTGGATTCAACTACTTCATGCTCTAGATCATCATGAACTCCCAGGTTGGCCCTTGCTATCTCCTTTAAAGGTTCAAATGCAGAAGTGTGACAAGTGTCTCCTGGAATTTTTCTCGTTTATCAACTATAGAAGACATATACGAGTGTATCATAGGATGAAAAAGCCTGATAAGGATTCTGCCAAAACTAGGGATTTACTAGCAGCATTTTGGGACAAGCTATCCTGGGAAGAGACGAAGGAGGCTGTATCATTTAAGAATGTCTCAATTGAGGGAATGCAAGGGTCAGCCGTTATCAAGAACCTGACGGCCATTATTGGAAAACCGAGATTTTCTGCCCTACCACATGTTTATTTGAGGGCAGGTTCTGCCCTTTTGGACATTGTACAAGGTAGACCGTCTAGGTTTCCCCTCTCTTCGCAGGAGCTATTTGAAATTCTTGACAATGCAAGTGAAAAAACATTCCTATGTGGAACTGCTTTCTCTATGCAAAAATATATATTTGATGGCGGGACAGTAAAGATCGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTTGCTGACAAGGATGCTGAAGCTTTGAGGTGTCAGAAGTTGCTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAAAGAAAAAGACAGAAGAAGCTAAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACGCGAAGAGAAGGCTGATATGGAAGCGAGTGTAAATGAAACAATAGAAGACGTGTTACCTGAAGAATCATCTAGCCCTCAAACTGAATGCCACTCAGAAGGGGACTCTCTGAGCATATTGGCTGATCACATTCCATCATCTATTGAAACATCTCAACAATCTCTAACTGATGAAGACGAAGATTCTGAGTCTTGTTTTGGGTCTCACAGTGGCTACCCTGAACATCTTCCTATTGATCACAATGGTGAACGGCAGAAAATACAAATGAATGGCCATAAGCATGTAATTGCTCAGTGGCAGGCATTGCCTAAGACGCAAAGGGGACTTTCTAACGGTTATCATGCAGATCAGAATTATCAGGGACACAAAAATGGAGATATGCGAAGGCATGGAAACCATGTGCTTTCAAGGGCTGCGCCCATTGCTAATGGGAAAAAAGTATGGAGCCGGAAGACCAAGCCAGAAAGAGATGGAGGCCGTTACCAAGCCAGGATTCTGGAAGAGACAACGGCCCAAGCGGAGGAAATTAAGAGCCATGAGGTTTTGATTGGTTCTATATCAGTGGCACTAGGAAATTGCAACCAAGAGAGTAAAAATCCAGTTGGAGCTCCAGATGATTGCCAGGATGGTCATCAAACGCCTAAGAAGATTAATAATCATGTTCAGAAGTTCATTAAGCCAGACTCTGTTCAAACTGCAACAAATCGGGTGATGGTTAAGCTTTGGAGGCCAGTTGGTCGTAATGGAACCAAATATGCAATGCTAGAGCAAAGTGACAATGAAGAATCTGAAGCTGAAGGGATAACTGAAAAGCTAGAAGATGAGGCGCTGCTGAATACATATTCTCCACGATCCTCTTCCTTGGATGGTGACAATGGGGACTTCGGAAACAACAACTCTTTGATCCAGGAAGAGACTGTGCAATCAGTTGGCCTGGAGTTCTCTAGTCGTGCTGCAAAAGCTTTCCTTGCACAGAGGTGGAAGGAGGCTATGACAGCCGACCACGTCAAATTGAATCTACCCTCCGATTCTGAGTCTTCTCGATGCTCTGAAATTCAAAATGACACAGAAACTTCTGCATTTCAATTGTCCAACTTTGACAGACGCAATGTTCTTGGCCATGCGATGTCAATTAATGTCGACCCTCCCAAGTCGTCCTCAGCCAATGAAGCCGGGAAGTCCAAGTTCAGGACAAAATTTGAAAAGGGTGCGAAGATAAAGTACATTCCCAAACTTCGAACTACTACCTGA 2166 43.49 MQHSIAVNILMPVAKLKNSNYPDVMKSEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDHHELPGWPLLSPLKVQMQKCDKCLLEFFSFINYRRHIRVYHRMKKPDKDSAKTRDLLAAFWDKLSWEETKEAVSFKNVSIEGMQGSAVIKNLTAIIGKPRFSALPHVYLRAGSALLDIVQGRPSRFPLSSQELFEILDNASEKTFLCGTAFSMQKYIFDGGTVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRQKKLRQKEQRSKEQKREEKADMEASVNETIEDVLPEESSSPQTECHSEGDSLSILADHIPSSIETSQQSLTDEDEDSESCFGSHSGYPEHLPIDHNGERQKIQMNGHKHVIAQWQALPKTQRGLSNGYHADQNYQGHKNGDMRRHGNHVLSRAAPIANGKKVWSRKTKPERDGGRYQARILEETTAQAEEIKSHEVLIGSISVALGNCNQESKNPVGAPDDCQDGHQTPKKINNHVQKFIKPDSVQTATNRVMVKLWRPVGRNGTKYAMLEQSDNEESEAEGITEKLEDEALLNTYSPRSSSLDGDNGDFGNNNSLIQEETVQSVGLEFSSRAAKAFLAQRWKEAMTADHVKLNLPSDSESSRCSEIQNDTETSAFQLSNFDRRNVLGHAMSINVDPPKSSSANEAGKSKFRTKFEKGAKIKYIPKLRTTT 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9789182 9793558 + CmaCh18G012550.1 Cma18g01255 314593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01255 721 MobiDBLite consensus disorder prediction 289 316 - -
Cma18g01255 721 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 114 IPR013087 -
Cma18g01255 721 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 11 720 - -
Cma18g01255 721 MobiDBLite consensus disorder prediction 682 701 - -
Cma18g01255 721 Coils Coil 560 580 - -
Cma18g01255 721 MobiDBLite consensus disorder prediction 322 339 - -
Cma18g01255 721 ProSitePatterns Zinc finger C2H2 type domain signature. 88 109 IPR013087 -
Cma18g01255 721 MobiDBLite consensus disorder prediction 289 339 - -
Cma18g01255 721 Coils Coil 283 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01255 - - - cmos:111449426 1354.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00117 Cma18g01255 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01255 Cma-Chr18:9789182 Cma16g00117 Cma-Chr16:529363 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01255 Cma_Chr18 FPKM 10.932796 10.299686 8.286248 10.539361 4.785738 4.209831 4.982715 13.705054 14.07181 13.58494