Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01256 ATGCCTTCGTGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACAAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTCAAGAATTCACCTGAAGGTAAAGTAAACAGCCGATCAGGAAGTTCTTGTAGACGTGGTGGTGACACTATATCTGAGAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACATTCTCACCAACTGCCACTTCCAGAACTGCACCCTATAGGTATAGGTCCCACAGACTCTGGGATTAGTGTGACGGCAAAATCAAAATTAGAGAGAAGCTCTAAGACATCTTCATTCCTACCACTCCCTAGACCTGCATGTATCCAGAGGAGGCCAGATCCTGCAGATTTGGATGGAGATTTAGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATATTGATGATCCCATTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGAAGTTGGGACTAGAACTGTGGTAGGTTCTATTGAACCTAGTGCAACTCTCAAGGACCAGTCTTCTACTGTTATGCAAACAAATTTAAAAGAGGGCAAGAAAGCGGAAAGTCTTTCATTTCCTCATAAGAAGCCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAATGTAACAAATCTGCAAGTTCCTCGTCATGGGGCATTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCTTCTAGAAGTCCTATGAGGGTATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGTCTGGAAAGTCTCACTCAGATGTCATTTTAGGTGGCTCTGGCCACTGCTCCAGTCCTGGTTCTGGACACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGCCCACTTCTTTTGGCAACAAAGTAGGGGCAGCCCCGAATATTCTCCAGTACCTAGTTCTAGAATGACTAGTCCCGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTTACACCTATTCATCCTAGAGCAGGAGCTCCGCCTGCTGAATCACAAACTTGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATTGCAATCTCAAACTCTTCTCCATTTTCTCATTCAAACTCTGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCTGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGTGGTACATTTGGGCATGTGTACGTTGGTTTTAATAGCGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACCTTATTTTCTGATGATGCGAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTACGGCATCCCAACATTGTGCAATATTATGGTTCAGAATCAGTGGGTGATAAACTGTATATTTATCTGGAATATGTATCTGGTGGCTCAATTTATAAATTACTACAAGAGTACGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGACATTAAAGGAGCAAACATACTTGTTGACCCTAATGGCCGTGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACAGGCCAATCATGTCCACTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGCCTTGGATGCACTGTTCTGGAGATGGCAACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGCAATAGCAAAGAACTCCCAGTAATTCCGGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGGAACCCGTATCATCGACCTACAGCTGCTCGACTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTTTTTTGAGCTCTGAACCCTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGACTTTGGGTATTGGCCAATCACGTATTACTTCTGTGGACTCGGATGGTAGACTCGCAGTTCATTCTTCAAGAGTCTCAAAACCTGTTCTTCATGCCAGTGACATCAACATTCTCAGAAACATCTCATGTCCTGTTTCACCAATTGGAAGCCCTCTTTTGCGCTCACGATCACCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCCATATCAAGTCCAAGAACTACTTCAGGCTCGTCGACACCTTTGACAGCATGTGGTGGTGCTATTCCTTACAACCACCTGAAACAAGCTATATACTTGCAAGAGGGATTAGGAAGCATGCCAAAGTCCTTAAATAATAGTCCATACAGCAGTGGTCTCTCGTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGTGCTCCCATCTTCTCTGAAATGATACCAGAAAATGATATCCTGGGCAAACAGGTTGGAGTCGGAAGACCTGCTTATGGTGAACTGTATGATGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCACTACCTTGTCTGGCCGCATGAATGGTATCTAA 2691 44.96 MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSCRRGGDTISEKSPLSRSPSPSKEVSRCQSFAERSHSHQLPLPELHPIGIGPTDSGISVTAKSKLERSSKTSSFLPLPRPACIQRRPDPADLDGDLVTGSVSGESSSDIDDPIDSRQRSPQATDYEVGTRTVVGSIEPSATLKDQSSTVMQTNLKEGKKAESLSFPHKKPSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWSGKSHSDVILGGSGHCSSPGSGHNSGHNSMGGDMAAHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSESVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPYHRPTAARLLDHPFVKYAAPVERPFLSSEPSDATPGVTNGVKTLGIGQSRITSVDSDGRLAVHSSRVSKPVLHASDINILRNISCPVSPIGSPLLRSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIYLQEGLGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQPGAPIFSEMIPENDILGKQVGVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNPSLDLSPSTTLSGRMNGI 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9793275 9800307 - CmaCh18G012560.1 Cma18g01256 314594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01256 896 MobiDBLite consensus disorder prediction 368 400 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 740 774 - -
Cma18g01256 896 SMART serkin_6 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01256 896 MobiDBLite consensus disorder prediction 162 202 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 311 337 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 1 223 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 36 80 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 877 896 - -
Cma18g01256 896 CDD STKc_MEKK1_plant 406 663 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 742 774 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 100 119 - -
Cma18g01256 896 SUPERFAMILY Protein kinase-like (PK-like) 405 664 IPR011009 -
Cma18g01256 896 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01256 896 MobiDBLite consensus disorder prediction 311 409 - -
Cma18g01256 896 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Cma18g01256 896 MobiDBLite consensus disorder prediction 879 896 - -
Cma18g01256 896 MobiDBLite consensus disorder prediction 9 35 - -
Cma18g01256 896 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01256 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 811 - -
Cma18g01256 896 Gene3D Transferase(Phosphotransferase) domain 1 405 681 - -
Cma18g01256 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 811 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00114 Cma18g01256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01097 Cma-Chr3:7515915 Cma18g01256 Cma-Chr18:9793275 1.86E-146 dispersed
Cma04g02328 Cma-Chr4:16197407 Cma18g01256 Cma-Chr18:9793275 8.16E-80 dispersed
Cma07g00720 Cma-Chr7:3172737 Cma18g01256 Cma-Chr18:9793275 2.10E-113 dispersed
Cma07g00805 Cma-Chr7:3686636 Cma18g01256 Cma-Chr18:9793275 6.77E-144 dispersed
Cma15g00713 Cma-Chr15:3435856 Cma18g01256 Cma-Chr18:9793275 3.97E-79 dispersed
Cma16g00114 Cma-Chr16:522963 Cma18g01256 Cma-Chr18:9793275 0 wgd
Cma18g01256 Cma-Chr18:9793275 Cma02g01071 Cma-Chr2:6378437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69321 PF00069 Pkinase 3.20E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01256 K20717 - csv:101214961 1528.07