Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01261 ATGTCTGAAGCAACGTCTTTGCCAGAAGCAACGCGTTTGGATCCGATTCTCCTCTCTCAATTAATCGTTGAACGGCATTTTCCGGCAGCGGCACCAGCGATGGCCTCTCGCTACGAAGTGGAGGTGAAAATCCTGTCAGCTAAAGATCTTAAGAACATCAATTGGCGTTACGGTGGCCTGAAACCGTACGCCGTCGTTTGGATTGATCCGAAGAGTAAATCGTCGACGAAGGTCGATGCCGAAGGCGACACGTCGCCGTACTGGGACGAAACGCTAGTCATTCCATTGTCATCGCCGATTGAAGACTCTACGCTTTACATCGACGTGGTCCACGTCGTCTCCGGTGACGAAGACACCAAGCCGCTGATCGGCTCCGCCAAGCTTCATCTCTCTGAGGTCGTCGACGATGTTGGCCTCGGTGAACGATCTCAGCGGACTCTCCAATTGAAACGGCCATCCGGCAGGCCACAAGGGAAGGTCGAAGTTAAAGTAACGGTTCGAGAACCACGTTACCGACCCTCCGATTCTTACTACGCGCCGCCGTATGGGGTCCCACCGCCAGGTACGAACAGGGATTTTTCTGCTCCGCCACCGCCGCAGCCCTATGCTGCTCCGTACTCTGCTCCTCATGATCCTTACTATTCGACGGCCCCGCCGTCCGGATACCCCTATGGCGGGTATAATGCACCGGCGCCGTATGGCCAATCGAATTACGGGCAATCGAATTACGGGCAGCCGAGTTACGGGCAGCCAGCGTATGGCGATCAGGTTTACGGGCATCCAGAGGAGAAGAAGAGCAAGTACGGGATGGGGACCGGATTGGCTATCGGTGCAGCGGCCGGAGTCTTAGGTGGATTGGCCTTGGGAGAAGGCGTCGAATACTTGGAGGACAAGATCGCCGAGGACGCGGCGGAGAGGGTGGAGGATGATCTTGGGTACGGCGACGATGATTTTTAG 957 56.11 MSEATSLPEATRLDPILLSQLIVERHFPAAAPAMASRYEVEVKILSAKDLKNINWRYGGLKPYAVVWIDPKSKSSTKVDAEGDTSPYWDETLVIPLSSPIEDSTLYIDVVHVVSGDEDTKPLIGSAKLHLSEVVDDVGLGERSQRTLQLKRPSGRPQGKVEVKVTVREPRYRPSDSYYAPPYGVPPPGTNRDFSAPPPPQPYAAPYSAPHDPYYSTAPPSGYPYGGYNAPAPYGQSNYGQSNYGQPSYGQPAYGDQVYGHPEEKKSKYGMGTGLAIGAAAGVLGGLALGEGVEYLEDKIAEDAAERVEDDLGYGDDDF 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9824177 9825133 - CmaCh18G012610.1 Cma18g01261 314599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01261 318 MobiDBLite consensus disorder prediction 166 210 - -
Cma18g01261 318 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 35 167 IPR035892 -
Cma18g01261 318 PANTHER INGRESSION PROTEIN FIC1 34 314 - -
Cma18g01261 318 Gene3D C2 domain 35 176 IPR035892 -
Cma18g01261 318 PANTHER PROTEIN SRC2-LIKE 34 314 - -
Cma18g01261 318 MobiDBLite consensus disorder prediction 179 206 - -
Cma18g01261 318 Pfam C2 domain 40 134 IPR000008 -
Cma18g01261 318 ProSiteProfiles C2 domain profile. 21 144 IPR000008 -
Cma18g01261 318 SMART C2_3c 39 142 IPR000008 -
Cma18g01261 318 CDD C2_SRC2_like 39 162 IPR044750 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01261 - - - cmax:111467646 564.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00109 Cma18g01261 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01064 Cma-Chr12:8410729 Cma18g01261 Cma-Chr18:9824177 1.23E-10 dispersed
Cma17g00133 Cma-Chr17:695812 Cma18g01261 Cma-Chr18:9824177 3.19E-07 dispersed
Cma18g01261 Cma-Chr18:9824177 Cma06g01041 Cma-Chr6:7015966 8.27E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g733 . . . . . . . . . Cmo18g01288 . . . . Sed07g1008 . Cpe14g00093 Bhi01g01270 Tan01g0217 Cmetu06g1400 . Hepe07g0137 . . . . . . . . . . . . . Lsi05g01208 . . Cme06g01023 . . . . . . . . . . . Cma16g00109 Cma18g01261 Car16g00097 Car18g01170 Cpe09g00076 . . . . . . . . Cla05g00900 Cam05g0984 Cec05g0989 Cco05g0987 Clacu05g0972 Cmu05g0929 Cre05g1014 . Csa03g01735 Chy06g00966 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009669 2 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01261 Cma_Chr18 FPKM 52.39603 54.728287 210.261734 193.704651 66.179596 64.5261 63.13792 725.957581 718.896179 664.79834