Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01262 ATGAGACCTCCTCGAGGCCGCGGTGGTGGTGGTGGGTTTAGAGGAAGGGGTGATGGAGGAAGGGGTGGTAGAGGCAGAGGTGGCGGTGGAGGTAGAGGCTTCGGTGGAGGCAGAGGCATGGCAAGCCGCGGTGGCGGTCGCGGAGGAGGAAGAGGTCGCGGTGGAGGAAGAGGAGGTGGTATGAAGGGGGGAAGCAAAGTTGTCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGAAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGTGAATCCGTGTACAATGAGAAGAGAATATCCGTACAGAACGAAGATGGAACAAAAATAGAATACAGAGTTTGGAACCCATTCAGGTCCAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCCGGTGCTCGAGTGTTGTATCTTGGTGCTGCATCAGGGACAACTGTATCTCATGTCTCAGATGTTGTTGGACCTTCTGGCATAGTGTATGCTGTTGAATTTTCCCATAGAAGTGGTAGAGATTTAGTCAACATGGCTAAGAAGCGTACAAATGTTATTCCCATCATTGAAGATGCCAGACATCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTTATCTTTTCGGATGTTGCTCAACCAGACCAGGCAAGAATTTTGGCCCTTAATGCATCCTATTTTCTCAAAGCCGGTGGCCATTTTGTCATATCAATCAAGGCCAACTGTATCGACTCAACAGTTCCCGCAGAGGCAGTGTTTGCAAGTGAAGTGAACAAGCTAAAGGCTGACCAGTTCAAACCCACAGAGCAAGTGACTCTTGAACCATTCGAGCGAGACCATGCTTGTGTTGTAGGACCCTCCGTTGCAGGGAAGGGTAATGCCATGAATTCACAAAGAAAAAGTGGGGTTAGTGGGCGAAAGCCCCTTGGCGATCTATCCAATTCAAGAAAGCCAGTCTTAAACCAGTCATTAAAATGGCAGAACACAAAGAATCTCACGTTTATTGATGAAGAAAATTGTGAAGGAAAAAAGAAAAACACACTGAAGGGCTCTGAGAGAGTACAGAAGGGTACTCGAAAAGTCCTTTCAGATATTTCAAACTCTGGAAAGCCAAATCTTCAAGAGGCCTCAAAGAAGAAGCAGAACTTGAAGTTGAGCACTGTAAGAGAAGAATTGATCCATCACAATTCTATTTGTGAGGAGCGCTTCTTGCACAATCATCAAGAGTGCATTAAAGCAAGAAAGTGCGCTGTGGAGAAGGATCAATTTCTAAGCATCGTTGGACTTGATCTCCCCAAGAAGTTGAAGATGGATAGAAAGTTTGGTATAGAGCAAAAACATGACCCAGATGCAATTTTTGGGTTGCAGCCTGATAGTCCATTGAAGCTCAAGGAGACGGCGGAATGGGAGATTTTCGATCAATCTCCAAAGAAGTTGCGTCTGTTTGGAAGGGGAAGGCTTGACTCATCACCGCCTTGCAAGTCCCCAAAATCACCTTCAGTGGATACCTTTTCACTCTGGAAGGACAGTGACAGTATTAATTTCACACAGGGAGCGAGTCAAGAGCTCACGACATTGCGCCTTTGGCCGATTCAAGCCTGCATTACAGCCTTGATTGAACTCCTAGGAATTCATTTGAGATTCATCAGTTCTCGAATGCTTCACTATCTTCATTTGTGGCAGTGTTTCAAAATTAGGCAAATGAGAAGCAGCCAGGCCCATTGGGCCGTTTTAGGAACCCCACTGATCAAAATTGTAAAAGATGATGATCATCATCAATCACGCACGATCAACGGTGGAAAGTAG 1830 46.07 MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGPSVAGKGNAMNSQRKSGVSGRKPLGDLSNSRKPVLNQSLKWQNTKNLTFIDEENCEGKKKNTLKGSERVQKGTRKVLSDISNSGKPNLQEASKKKQNLKLSTVREELIHHNSICEERFLHNHQECIKARKCAVEKDQFLSIVGLDLPKKLKMDRKFGIEQKHDPDAIFGLQPDSPLKLKETAEWEIFDQSPKKLRLFGRGRLDSSPPCKSPKSPSVDTFSLWKDSDSINFTQGASQELTTLRLWPIQACITALIELLGIHLRFISSRMLHYLHLWQCFKIRQMRSSQAHWAVLGTPLIKIVKDDDHHQSRTINGGK 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9826835 9833687 + CmaCh18G012620.1 Cma18g01262 314600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01262 609 Gene3D Phosphorylase Kinase; domain 1 64 119 - -
Cma18g01262 609 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 83 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 295 - -
Cma18g01262 609 Pfam Fibrillarin 69 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 MobiDBLite consensus disorder prediction 295 326 - -
Cma18g01262 609 ProSitePatterns Fibrillarin signature. 167 181 IPR020813 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 67 292 IPR029063 -
Cma18g01262 609 Gene3D Vaccinia Virus protein VP39 120 295 IPR029063 -
Cma18g01262 609 PRINTS Fibrillarin signature 274 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 192 221 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 222 251 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 87 106 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 142 163 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 115 134 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PRINTS Fibrillarin signature 167 184 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 SMART Fibrillarin_2 69 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma18g01262 609 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 295 - -
Cma18g01262 609 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01262 K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] - csv:101213750 464.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00107 Cma18g01262 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00107 Cma-Chr16:477548 Cma18g01262 Cma-Chr18:9826835 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002978 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 3 1 2 2 1 2 2 2 1 3 3 1 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01262 Cma_Chr18 FPKM 64.213928 62.993046 44.501854 43.461246 71.600365 76.116951 71.67981 81.436028 85.79924 83.196503