Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01263 ATGGTAGTTTCTCTAAGACTACCTTCGCTCTCCTCTTTGCTTTCCCCAGCCTCTCCTTTCACTTTTTCCAGGCGAGCTCTGGGCATTTCATTGCGGCAGCAACGCCCGTTCCGGTTGCCTCTGCTTGCTCCTCGATTCTCGGTGCGAAGCTCATCTACCGGGACCGAAATTCATGTCGACAACTCGAAGAATCGAGTTCCGGAAGGGGCTATCACGCCTCGGTCGCAGGACTTCAATGCTTGGTATTTGGATATTATTGCTAACGCTGAGCTCGCGGATTATGGCCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGCTACGCCATATGGGAAGCAATACAGGAATATCTGAATGTTAAGTTCAAGGAGACTGGTCACGAGAATATGTACTTTCCCCAGTTTATACCATACTCGTTCATTGAGAAGGAAGCGAGTCATGTCGAAGGGTTTAGTCCGGAGTTAGCTCTTGTAACCATTGGAGGAGGGAAAGAACTTGAAGAGAAGCTTGTGGTTCGACCTACGAGTGAAACTATTGTGAATCACATGTTTACACAGTGGATTCATAGTCACCGTGATCTTCCCTTGATGATTAATCAGTGGGCGAATGTTACTAGATGGGAGATGCGGACGAAGCCCTTTGTAAGAACTCTTGAATTTCTGTGGCAGGAGGGTCACACTGCTCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGACATATATACAAAATTTGCTTACGAGCAAGCGGCAATACCTGTTATTGCAGGTCGAAAATCAAAGATGGAGACATTTGCTGGTGCAGACAAGACATATACAATAGAGGCCATGATGGGGGATCGAAAAGCACTTCAGGCAGGAACCAGCCACAACCTTGGGCAAAACTTTTCTCGTGCTTTTGGAACACAGTTCACCGATGAAAATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAATTAGTACACGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAGGCTTGCTCCAATACAGGTGGTAATCATACCAATCTGGAAGAAAGAAGGTGTTAAAGCAGAAGTTCTTAATGCTGCTGCTTCTGTAGAAGTAAATCTTCGAACGGCAGGGATAAAGGTTAAACTCGATAATTCTGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGCGTTCCTTTGAGGATTGAGATTGGTCCCAAGGATGTTGCAAATCAAAGTGTGGTTATTTCTAGGAGAGATATTCCTGGAAAGCAAGGGAAAGTTTTTGGGATATCCATGGAACCTTCTATTTTAGAAGCTTATGTGAAAGACACGTTGGATGAAATCCAATCATCTCTTCTGGAACAAGCAAAAACATTTCGTGACAGTAACGTTGTGGATGTGAGTTCATATAATGAACTTAAAGAGGCAATCTCCCAGGGAAAATGGGCTAGGGGTCCTTGGTCAGCTAGTGACAAAGATGAGTTGAAAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCTTTTGAACAGACACCGGGGCCTAAAACATGCTTGATGACCGGTAACGCTGCGGAGGAAGTTGCCATTTTTGCGAAGTCTTATTGA 1647 44.63 MVVSLRLPSLSSLLSPASPFTFSRRALGISLRQQRPFRLPLLAPRFSVRSSSTGTEIHVDNSKNRVPEGAITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHENMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSHRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEAIQMIDIYTKFAYEQAAIPVIAGRKSKMETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDGGLMLPPRLAPIQVVIIPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDNSEQRTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVKDTLDEIQSSLLEQAKTFRDSNVVDVSSYNELKEAISQGKWARGPWSASDKDELKVKEETGATIRCFPFEQTPGPKTCLMTGNAAEEVAIFAKSY 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9833796 9838109 + CmaCh18G012630.1 Cma18g01263 314601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01263 548 PANTHER BNAC09G28510D PROTEIN 2 548 - -
Cma18g01263 548 SUPERFAMILY Class II aaRS and biotin synthetases 77 340 IPR045864 -
Cma18g01263 548 Pfam Prolyl-tRNA synthetase, C-terminal 482 548 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 PRINTS Prolyl-tRNA synthetase signature 129 147 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 PRINTS Prolyl-tRNA synthetase signature 170 181 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 PRINTS Prolyl-tRNA synthetase signature 200 208 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 PRINTS Prolyl-tRNA synthetase signature 209 220 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 Pfam Anticodon binding domain 353 432 IPR004154 -
Cma18g01263 548 PANTHER PROLYL-TRNA SYNTHETASE 2 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 CDD ProRS_anticodon_zinc 342 548 - -
Cma18g01263 548 SUPERFAMILY Class II aaRS ABD-related 342 474 - -
Cma18g01263 548 SUPERFAMILY C-terminal domain of ProRS 477 548 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 Gene3D Bira Bifunctional Protein; Domain 2 66 346 IPR045864 -
Cma18g01263 548 TIGRFAM proS_fam_I: proline--tRNA ligase 72 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 Hamap Proline--tRNA ligase [proS]. 71 548 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 Gene3D - 477 548 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 SMART ProRS_C_1_2 482 548 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cma18g01263 548 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 98 346 IPR006195 -
Cma18g01263 548 Gene3D - 347 473 IPR036621 -
Cma18g01263 548 CDD ProRS_core_arch_euk 77 336 IPR033721 -
Cma18g01263 548 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 165 334 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01263 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - csv:101217773 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01479 Cma-Chr14:11243385 Cma18g01263 Cma-Chr18:9833796 6.66E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01263 Cma_Chr18 FPKM 10.518518 11.668418 21.939173 23.65505 51.877071 49.389668 53.821674 39.857262 34.995579 36.773869