Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01264 ATGGCGATCTCCAAATTCCTCTTTCTCCTTCTTCTTTTCCTTCCCTTTTCTTCTCCTGAGTTTGTTCCCTCTGACATTTATCTTCTCAGCTGCGGCTCGTCCTCCAGTCCCACCTTCTTTAACCGTACCTTCGTCGGCGATTCAGTCAAACCCGCCTCCGACTTTCTCACTGCTGGCCGATCGGTGGCGGTTTCCAATCGAAATCCGCCTCCGGATTCTGAGCCTTTGTATCATACGGCCAGAGTTTTCACCAGCGCCTCAAGCTACAGATTCAACATAAAAAAGAACGGTACTCACTTGCTGCGGTTCCATCTTTCGCCATTTTCGGCGCCGGAATTCGCTTTACATTCCGCAAATTTTACTATCTGGGCTAATGGTGCTTTTCTTTCTATGATTTCTCGCGTTAACGATTCTGTGATTAAAGAGTTTATGGTGAGAATTGACACCAATGTGCTTGAAATCGAGTTCAAACCGGTTTCGAGTACAGTTTTCGGGTTCGCAAATGCAATCGAGGTATTTTCAGCTCCTAAAGAACTCATTACCGATAATGGAGCTAAGCTTGTGGATTCTTATGGAGTTCGAGAATATTACAAACTCACTTCACAAATTTTGGAAACGAAATACAGAATTAACGTTGGGGGTTCTCTGGTGACCCCGTTCAATGACAGCCTATGGAGAACTTGGGTGCCTGACGAGCCTTTTCTGGTATTAAAATCGGCGGCAAAGGTCGCCGCAACTTTTCACGCGCCGAACTATCAGGCCGGTGGCGCTACCAGGGAGGACGCGCCGGACAGCGTTTATATGACATTGCAACAGATGAACAAGGAAAACTCAACTTTGGGTGCAAAATTCAACCTCACTTGGAACTTTCCATTGGAATCTAATGGCGCGAAGCACTTGATTCGCTTGCATTTCTGTGATATTGTTAGCTCTGCTCTTAATCAGCTGTATTTTAATGTGTATATCAATGGCTATTCTGCATATAGGGATCTGGATTTGTCATCTCTTTCATTTCACCAGCTTTCAACTCCTCTTTATGTTGATTTCATTGTGGATTCTGCTGGTTTTGGGAATATTCAGATAAGTGTTGGACCGTCTGATCTGAGCAGTTCATTCAGATATAATGCGATCTTAAATGGAGCAGAGATCCTGGAAATGGTGAATGCTAAGGATATGTTTTCAGAAGCTGAGAAGAAGAAGAGAAATTTATGGGTTATTGTAGGACCTGTTGTTGGTGGATTTGTTGGTTTATGTTTGGTTGTTGCTGCAATTCTTGCTTTGGGATGCAAAAGGAGGAAGAAGAGGAAGCCGAGGCGGGCCGAGAGTGCAGGTTGGACATCGGTTCAGGCGTATGGAGGAGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTGCAACATCTTTTGGACCAAATGGATACCACAGCTTGAAGATCCCCTTTGCCGATATTCAGTTGGCGACAAACGACTTCGACAAGAGTTTGATCATTGGTTCGGGCGGATTTGGTATGGTTTACAAAGGGGTTCTTGGGGACAATATAAATGTTGCTGTGAAGAGAGGTGTGCCAGGATCACGTCAGGGTCTGCCTGAATTCCACACTGAGATTGCCATTTTGTCCAAGATTCGACATCACCATCTTGTTTCGCTTGTTGGATATTGTGATGAACAGTCTGAAATGATACTGGTTTATGAATATATGGAGAAAGGTCCATTGAAAAAGCAATTGTATGGCCCGATTGTCTCACCGTTGTCATGGAAGCAACGACTCGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGTTTTGCACAGGGCATCATCCACCGTGATATCAAGTCGACCAACATTTTGCTGGATGAGAACTATGTTGCTAAAGTTGCAGATTTTGGTCTTTCAAGATCCGGGCCTCGTCTCGATGAAACCCATGTTAGTACTGGAGTTAAAGGCAGCTTCGGCTATCTAGATCCCGAGTATTTTCGAAGACAACAACTCACTGATAAGTCGGATGTCTATTCATTTGGAGTAGTTCTCTTTGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGCTAGGGAACAAGTAAACCTTGCGGAATGGGCACTGCATTGGCAAAGGAAAGGCATGCTCGAAAAGATTATCGATCCACATTTGGTCGGGCAAATCAATCCGAGTTCGTTGAAGAAGTATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGTATTGACAGACCAACCATGGGAGATGTGTTATGGAACTTGGAATATGTTCTTCAACTACAAGTCGGGATACAGACCGAACCATTGGAACCCGTGGACATCGACGACTCCGACTTCCCAACATCCACAGCAATTCATCCTAGCAACTTGAGGAGACATTCAGATGAAAGTACTGGTAATTATTCAGACATAAGTACAACCAAAGTTTTCTCCCAATTGCTTACTAATGATGGAAGATAG 2484 44.32 MAISKFLFLLLLFLPFSSPEFVPSDIYLLSCGSSSSPTFFNRTFVGDSVKPASDFLTAGRSVAVSNRNPPPDSEPLYHTARVFTSASSYRFNIKKNGTHLLRFHLSPFSAPEFALHSANFTIWANGAFLSMISRVNDSVIKEFMVRIDTNVLEIEFKPVSSTVFGFANAIEVFSAPKELITDNGAKLVDSYGVREYYKLTSQILETKYRINVGGSLVTPFNDSLWRTWVPDEPFLVLKSAAKVAATFHAPNYQAGGATREDAPDSVYMTLQQMNKENSTLGAKFNLTWNFPLESNGAKHLIRLHFCDIVSSALNQLYFNVYINGYSAYRDLDLSSLSFHQLSTPLYVDFIVDSAGFGNIQISVGPSDLSSSFRYNAILNGAEILEMVNAKDMFSEAEKKKRNLWVIVGPVVGGFVGLCLVVAAILALGCKRRKKRKPRRAESAGWTSVQAYGGGSSDSKLSRGSTLATSFGPNGYHSLKIPFADIQLATNDFDKSLIIGSGGFGMVYKGVLGDNINVAVKRGVPGSRQGLPEFHTEIAILSKIRHHHLVSLVGYCDEQSEMILVYEYMEKGPLKKQLYGPIVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLAREQVNLAEWALHWQRKGMLEKIIDPHLVGQINPSSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQVGIQTEPLEPVDIDDSDFPTSTAIHPSNLRRHSDESTGNYSDISTTKVFSQLLTNDGR 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9840380 9842863 + CmaCh18G012640.1 Cma18g01264 314602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01264 827 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 774 - -
Cma18g01264 827 SUPERFAMILY Protein kinase-like (PK-like) 477 763 IPR011009 -
Cma18g01264 827 CDD STKc_IRAK 498 763 - -
Cma18g01264 827 Gene3D - 204 387 - -
Cma18g01264 827 Gene3D - 25 176 - -
Cma18g01264 827 SMART serkin_6 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01264 827 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Cma18g01264 827 Pfam Malectin-like domain 29 385 IPR024788 -
Cma18g01264 827 PANTHER OS07G0166700 PROTEIN 15 774 IPR045272 GO:0004714|GO:0006468
Cma18g01264 827 Pfam Protein tyrosine and serine/threonine kinase 497 688 IPR001245 GO:0004672|GO:0006468
Cma18g01264 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Cma18g01264 827 Gene3D Transferase(Phosphotransferase) domain 1 568 775 - -
Cma18g01264 827 ProSiteProfiles Protein kinase domain profile. 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01264 827 Gene3D Phosphorylase Kinase; domain 1 458 567 - -
Cma18g01264 827 MobiDBLite consensus disorder prediction 779 811 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01264 - - - cpep:111801649 1592.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00104 Cma18g01264 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01264 Cma-Chr18:9840380 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma16g00104 Cma-Chr16:465761 Cma18g01264 Cma-Chr18:9840380 0 wgd
Cma18g01264 Cma-Chr18:9840380 Cma08g00891 Cma-Chr8:5518087 1.56E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69322 PF12819 Malectin_like 6.10E-30 CL0202 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01264 Cma_Chr18 FPKM 7.072061 6.724361 10.910939 10.427427 4.74055 4.761279 5.627823 9.767553 8.328438 8.764081