Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01266 ATGACTGACGTGATGCTGCATATATACGACGTCACGAATAGCGGATCAGATAAGACCAACAATACAATTGTTAATATCAACAAGATCTTCAAGGATGGAATTGGTCTAGGCGGTATCTTCCATAGCGCTGTTCAGGTTTATGGAGATGATGAATGGTCTTTTGGGTTTTGCGAGCAAGGAACTGGAGTTTTCAGTTGCCCTTCTGGACAGAATCCGATGTACACATATCGTGAAAGTATTAACCTTGGTAAAACAAACTGTTCAATTTTCAAGGTGAATCAGATTTTAAGGGAACTTAGTAGAGAGTGGCCTGGAAGTTCATATGACTTACTTTCAAGAAACTGTAACCACTTTTGTGATCAGTTCTGTGAAATGCTCAGTGTATCAAAACTTCCAGGTTGGGTTAATCGGTTTGCCAACGCTGGTGATGCTGCATTGGAAGTAGCTGGAAACACAGCAGTTCGTTTCAAACAAGCGAAAACGGAGATCATATCGGCCAGCAAAGTGGCTTACCGTTTTATTCTAGGGGCCACGAACAACGTCATATCACCCACAGAGTCTACAGATGACTCAAATAGAGGTACTTCTAGATTTCAAGCTGCATGGTTTAAGAATCTTATTACCACAGGTGCCAAACCATCGAGTAGTTCAGAAGTAGGGAATGAAGTTGAAGAAGGTGCAGCAGAGCAACAAAGCAAAGCAAATGAAGAGACACCAATATTGCTCAATTCACGAGCGCAACAAGACATGTGA 753 41.83 MTDVMLHIYDVTNSGSDKTNNTIVNINKIFKDGIGLGGIFHSAVQVYGDDEWSFGFCEQGTGVFSCPSGQNPMYTYRESINLGKTNCSIFKVNQILRELSREWPGSSYDLLSRNCNHFCDQFCEMLSVSKLPGWVNRFANAGDAALEVAGNTAVRFKQAKTEIISASKVAYRFILGATNNVISPTESTDDSNRGTSRFQAAWFKNLITTGAKPSSSSEVGNEVEEGAAEQQSKANEETPILLNSRAQQDM 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9844818 9847832 + CmaCh18G012660.1 Cma18g01266 314604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01266 250 MobiDBLite consensus disorder prediction 232 250 - -
Cma18g01266 250 Pfam PPPDE putative peptidase domain 3 145 IPR008580 GO:0008233
Cma18g01266 250 ProSiteProfiles PPPDE domain profile. 2 150 IPR008580 GO:0008233
Cma18g01266 250 PANTHER EXPRESSED PROTEIN 1 237 - -
Cma18g01266 250 PANTHER DESUMOYLATING ISOPEPTIDASE 1 237 IPR008580 GO:0008233
Cma18g01266 250 SMART DUF862_2a 2 157 IPR008580 GO:0008233
Cma18g01266 250 Gene3D PPPDE domains 1 168 IPR042266 -
Cma18g01266 250 MobiDBLite consensus disorder prediction 209 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01266 - - - csv:101212629 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00103 Cma18g01266 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01266 Cma-Chr18:9844818 Cma12g00358 Cma-Chr12:1811495 2.51E-26 dispersed
Cma16g00103 Cma-Chr16:460296 Cma18g01266 Cma-Chr18:9844818 2.21E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g751 . . . Bda07g01899 Bpe03g00150 . Bma10g01245 Bma14g02047 Cmo16g00110 Cmo18g01295 . . . . . . . . . . . . . . . . . . . . . Cone1ag1188 Cone5ag0888 . . Lsi05g01199 . . . Blo07g00378 Blo09g00067 . . . . . . . . . Cma16g00103 Cma18g01266 Car16g00092 Car18g01175 Cpe09g00071 . . . . . . . . Cla05g00908 Cam05g0994 Cec05g0997 Cco05g0995 Clacu05g0982 Cmu05g0938 Cre05g1022 . Csa03g01742 Chy06g00972 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005875 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01266 Cma_Chr18 FPKM 18.095062 16.801296 11.885014 12.651497 21.897913 23.469759 23.850632 9.497605 10.125378 11.110624