Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01267 ATGCAGAAGAAGAATACTACTCTTCGTTTGGATCAAGCTTTATATTGTGGGCCAGCCGATGAGAGCCGAGCCGCCAAGAAGGTTATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAGCCTGTCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGGCGGTTAGAAAAAGCGCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCGAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCCTGATTGGTGAAGACTCAGATGACTCGTACAAGATTCTTCTAGAGAATGACGGTCTCAACCCTTGGGAGTGCCCTGGGCAGTTTGACCACGTAATGAGTGTTACAAGACCAGACATTCCAGTGCAGGAGTTTGGGAGATGTACCACCCTTGATGGGACTGGTTGGACTTCTAACATCGATAGATTTGGATCAATGTGGCATGGTTTTGGGAGCGATTATTGGTCGGTCTCTGCTGGACATTATGCTGAGGATCACCGTGCATTATGTTTCAAGCAAGTTGATGGAGCTGTAAGTGAGATTTCTGCTGGCATTATAGCGGCGCAGGCTGTCTCATCACTTCATATTACGGTAGATGGGGATGAAGAATTCAACGCCCTTAACAGAAAGCGAAGGGGTATGTAA 738 45.39 MQKKNTTLRLDQALYCGPADESRAAKKVMASFVASMGNKGQPVVKKAKKKQVKDELDRQKQAEKKKRRLEKALATSAAIISELEKKKQMKKEEQRRLDEEGAAIAEAVALHVLIGEDSDDSYKILLENDGLNPWECPGQFDHVMSVTRPDIPVQEFGRCTTLDGTGWTSNIDRFGSMWHGFGSDYWSVSAGHYAEDHRALCFKQVDGAVSEISAGIIAAQAVSSLHITVDGDEEFNALNRKRRGM 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9848459 9852872 - CmaCh18G012670.1 Cma18g01267 314605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01267 245 MobiDBLite consensus disorder prediction 38 70 - -
Cma18g01267 245 MobiDBLite consensus disorder prediction 47 70 - -
Cma18g01267 245 PANTHER OS02G0104200 PROTEIN 25 241 - -
Cma18g01267 245 Coils Coil 45 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01267 - - - cmax:111467587 417.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00102 Cma18g01267 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01267 Cma-Chr18:9848459 Cma19g00523 Cma-Chr19:6095037 7.57E-06 dispersed
Cma16g00102 Cma-Chr16:459191 Cma18g01267 Cma-Chr18:9848459 1.93E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g752 . . . Bda07g01900 Bpe03g00151 . Bma10g01246 Bma14g02046 Cmo16g00109 Cmo18g01297 . . . . . . Cpe14g00088 . . . . . . . . . . . . . . . . Cone14ag0060 . Lsi05g01198 . . . . . . . . . . . . . . Cma16g00102 Cma18g01267 . Car18g01176 Cpe09g00070 . . . . . . . . Cla05g00909 Cam05g0995 Cec05g0998 Cco05g0996 Clacu05g0983 Cmu05g0939 Cre05g1023 . Csa03g01743 Chy06g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003943 1 0 0 2 2 1 2 1 1 1 1 1 2 1 2 2 1 0 2 1 1 1 1 1 2 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01267 Cma_Chr18 FPKM 36.87669 38.10429 65.215591 65.720894 45.336735 48.740372 45.513798 53.081371 56.258163 57.36277