Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01268 ATGGCAGCTGGATCATGGAAGAGGAGGCAGTCTAAGCGGTCGAATTTCAAGACCTCTGCAGCCATGGCTTCTCGGCCTTCTTCTCGACCTTTCCGTATCCCTAGAAGTACTGCCCTGCTGGTTTCGATTTGCCTGATCTTCTTTATTGTTCTGGTCTCCGGCCTTTCTTTGAATGCATTGCGTAGATCGGCCAAATATGGAGTTCAATCGCCAATAATTTACTCTATTGAGGTGGTCAACGAATTTCCTCACGATCCTAGAGCCTTCACTCAGGGACTGGTTTATGTAGAAAATGACACACTGTTTGAGTCAACTGGCCTCTATGGACAGTCGTCAGTTCGAAAAGTCGCTCTCTCTACTGGGAAGACCGAGGCTCTTCACGAGATGGATGCCTCTTACTTTGGGGAAGGCTTAACACTTCTTGGGGAAAGGCTGTTTCAAGTAACTTGGTTGAAGAAAACTGGTTTCATATATGACCGAAACAATTTAAGCAAAGTTAAGGAATTCACTCATCAAATGACTGATGGTTGGGGGTTGGCAACAGATGGAAAAATTTTGTTTGGAAGTGATGGGACATCAACATTATATCAGATTGATCCACAGACATTTACAGTTACAAATAAATGGGTTGTGAGTTATGAAGGAGATGAGGTGTATAACCTCAATGAGCTGGAATTCGTCAATGGAGAAATCTGGGCAAATGTTTTTATGAAGGGAATTGTTGCAAAGGGGGAAACGATGACAGGAAAGCTATGGCCAAAGCTCTTCGAAATCAAACTGCAGCCATCAAAGGAGCATTATGCTATTGAAGAGATAAAGCAGCTTTGCTTGCGTCCATTTCCCTCTCCCGCCATGGCATTCAACTTAGTTTCTATTGAGACGTGGCTATCTAGTCCCACAGCATCGGGAGTGAAACTATGGGTTCTGATTGTGATTTGTGTATTTCTTCTTCTAATTCTTATTCTTACCTTCATTTGTCAACTCTATTGTCATCGTCGTAAGCGGAATCGGAACTGTCAAAGCGAAGATCGTGAAACGGCGATTTCAGGAGAAGTTTCTACGGAGATTGACGAAAAGAAGGGTTCCGATGATGAGTTTTCACGGCAAGGTAGTACGAATATTGATCAGTATAGTATTTTCACAGATTGGGAGTATTCGGCCGGTCGGTACTCGATAGCGGCGGTCAAGGATGGGCATAGAAGGAGCACATTTGCGCTCGATGAGATTGAGCTAGCGACGGATGGATTCAGCGCAAAGAATGTCATTAGTATCGAAGATTACAATGTTGATTATCTTGGAATTTTGGCTGATGATACAAAAGTGATTGTCAAGATATTCAATGCAAATAACAGTATTGAAGACGATGAATTCATCCGAGAAGCGGAGAGAATTCAACATATTAACCATAAAAATCTGGTCAAGTTGCTTGGATACCGCACTCGAGGAATTGAGAAAAATAGGATTTTTGTCTATGAAAATGTAGATAACGGGAATCTGCATCAATGGCTTCATGGATGTCCACTGAAACCGTTTAGCCCTCTGTCATGGTCCAATAGGATGAACATTATTCAAGGCATTGCAAAAGGATTAGCGTATCTTCATGAAGATGTGGAACCACAAATTCTCCATGGCAGGCTAAGATCAAGCTGCATATTACTTGATCAGAATTTGAATCCCAAGATTTTCAATTTCGGTATACTTGCCCTTTTTCCTCCACAGAACTTGCAGGGACCTTTGGTTGGAGAAGCGTCAGTGGCACATTTGATAGAATGGGTACAATCATTGATTGGGAGTGAAGATGAAGTGGAAATGGTGGATTCCAAATTGGAAGAAAGGCCAACTTCAAAGCAACTCAAACGAATGCTTTTAATTGCCCTTCGTTGCGTTGATCCAGACATGCAGCATAGGCCGAGTATGGGCCAAATCCTTGTCATGCTTCTGCCTCAGGACCTCACCTTTTACTCCCTCATCTCTCTCTCGCCGCTGTCGTTCTCTCCGAGAAGCTTCCCTTTCTTCCACCGTATTTTCACCTTTATCTCTCCCATGGCGGCCAGCCTCTCTGCCGTCTTAGGGCCCAAACCATTCCATGTCTTCCTTACTTCCTCCAATCTCTCCCCTAAACCTCGAACTCCGTTGCTGTTTCCATCTTCGGTCTTCCGGAACAGTAGAATCCAATGGAAGATGCGGAGAAAAACGCTGCTCACCGTCTGCGTGCTCGTTGAGGATCAGAGTAGTTCCAGCGAGGTGGAAAATCTCGCAGATGAAAAATTACTGATTATAGTCCCGCAGATCCCATCGCCTCATGTTGCAGAGAAATTAGCGAGGAAGAAATCGGAGCGCTTCACTTATCTTGTTGCTGCAGTTATGTCTAGTTTTGGAATTACTTCCATGGCTGTCATGGCAGTTTACTACCGATTTCACTGGCAAATGGAGGGCGGAGAGATTCCTTTCTCTGAAATGTTTGGTACATTTGCTCTCTCCGTTGGTGCCGCTGTCGGCATGGAGTTTTGGGCAAGATGGGCACATAGGGCTCTCTGGCACGCTTCCTTGTGGCATATGCACGAGTCTCACCACAAACCAAGAGAAGGACCGTTCGAATTGAACGATGTTTTCGCTATAACCAACGCCGTGCCCGCCATAGCTCTCCTCTCTTACGGCTTCTTCCATAAAGGCCTCGTCCCTGGTCTCTGCTTCGGCGCTGGCCTTGGAATTACTGTGTTTGGGATGGCCTACATGTTCGTCCACGACGGTCTCGTTCACAAAAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAAGGTCGCTGCTGCTCACCAGCTTCATCATTCGGAAAAGTTAAACGGTGTTCCGTACGGGCTGTTTTTGGGTCCAAAGGAATTAGAGGAAGTGGGAGGCCTAGAAGAATTGGAGAAGGAAATCAACAGAAGAATAAAATCCACGGCCAAAAAACCAATCAACGGTTCTTGA 2976 45.16 MAAGSWKRRQSKRSNFKTSAAMASRPSSRPFRIPRSTALLVSICLIFFIVLVSGLSLNALRRSAKYGVQSPIIYSIEVVNEFPHDPRAFTQGLVYVENDTLFESTGLYGQSSVRKVALSTGKTEALHEMDASYFGEGLTLLGERLFQVTWLKKTGFIYDRNNLSKVKEFTHQMTDGWGLATDGKILFGSDGTSTLYQIDPQTFTVTNKWVVSYEGDEVYNLNELEFVNGEIWANVFMKGIVAKGETMTGKLWPKLFEIKLQPSKEHYAIEEIKQLCLRPFPSPAMAFNLVSIETWLSSPTASGVKLWVLIVICVFLLLILILTFICQLYCHRRKRNRNCQSEDRETAISGEVSTEIDEKKGSDDEFSRQGSTNIDQYSIFTDWEYSAGRYSIAAVKDGHRRSTFALDEIELATDGFSAKNVISIEDYNVDYLGILADDTKVIVKIFNANNSIEDDEFIREAERIQHINHKNLVKLLGYRTRGIEKNRIFVYENVDNGNLHQWLHGCPLKPFSPLSWSNRMNIIQGIAKGLAYLHEDVEPQILHGRLRSSCILLDQNLNPKIFNFGILALFPPQNLQGPLVGEASVAHLIEWVQSLIGSEDEVEMVDSKLEERPTSKQLKRMLLIALRCVDPDMQHRPSMGQILVMLLPQDLTFYSLISLSPLSFSPRSFPFFHRIFTFISPMAASLSAVLGPKPFHVFLTSSNLSPKPRTPLLFPSSVFRNSRIQWKMRRKTLLTVCVLVEDQSSSSEVENLADEKLLIIVPQIPSPHVAEKLARKKSERFTYLVAAVMSSFGITSMAVMAVYYRFHWQMEGGEIPFSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHKPREGPFELNDVFAITNAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSEKLNGVPYGLFLGPKELEEVGGLEELEKEINRRIKSTAKKPINGS 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9855086 9866453 - CmaCh18G012680.1 Cma18g01268 314606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01268 991 SUPERFAMILY Protein kinase-like (PK-like) 406 664 IPR011009 -
Cma18g01268 991 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 76 241 IPR011044 -
Cma18g01268 991 PANTHER BETA-CAROTENE HYDROXYLASE 696 982 - -
Cma18g01268 991 ProSiteProfiles Protein kinase domain profile. 416 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01268 991 Gene3D Phosphorylase Kinase; domain 1 385 492 - -
Cma18g01268 991 Pfam Protein tyrosine and serine/threonine kinase 437 567 IPR001245 GO:0004672|GO:0006468
Cma18g01268 991 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 696 982 IPR045019 GO:0016491
Cma18g01268 991 Pfam Fatty acid hydroxylase 830 957 IPR006694 GO:0005506|GO:0008610|GO:0016491
Cma18g01268 991 Gene3D Transferase(Phosphotransferase) domain 1 577 652 - -
Cma18g01268 991 Gene3D Transferase(Phosphotransferase) domain 1 494 576 - -
Cma18g01268 991 MobiDBLite consensus disorder prediction 1 29 - -
Cma18g01268 991 Pfam Glutamine cyclotransferase 64 242 IPR007788 GO:0016603|GO:0017186
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00100 Cma18g01268 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00100 Cma-Chr16:447168 Cma18g01268 Cma-Chr18:9855086 0 dispersed
Cma18g01268 Cma-Chr18:9855086 Cma03g00971 Cma-Chr3:6874473 4.37E-57 dispersed
Cma14g02059 Cma-Chr14:14306599 Cma18g01268 Cma-Chr18:9855086 6.01E-55 wgd
Cma15g01247 Cma-Chr15:7922649 Cma18g01268 Cma-Chr18:9855086 1.27E-113 wgd
Cma16g00099 Cma-Chr16:440870 Cma18g01268 Cma-Chr18:9855086 2.40E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69323 PF05096 Glu_cyclase_2 1.60E-63 CL0186 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01268 K15746 - csv:101212140 553.518