Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01272 ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTCGACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATAACTCAACAACCACCAAGAATCTCAGAGTTTTCACAGGAACATCCCGAGGCCAAATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACTTTCCGACCAAAACAATAGCAGAGACGGCGGCGACGACGATGAAATTCCGGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAATTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTTCCAATTTGGCTGCCGTTTTTGACGATTTTTTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAGACTAA 567 50.62 MKALVCSFRHALDLSKPPPWKQRSRIDNSTTTKNLRVFTGTSRGQIQLNAKGFTGSPATAKDRETAVKKLSDQNNSRDGGDDDEIPEAVAKRIITRILAFVGIPMAFGVTLVKILEAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKEEDEANRGGD 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9877833 9878399 - CmaCh18G012720.1 Cma18g01272 314610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01272 188 MobiDBLite consensus disorder prediction 53 84 - -
Cma18g01272 188 PANTHER EXPRESSED PROTEIN 1 184 - -
Cma18g01272 188 Pfam Photosynthesis affected mutant 68 58 179 IPR021855 -
Cma18g01272 188 PANTHER PROTEIN PAM68, CHLOROPLASTIC 1 184 IPR021855 -
Cma18g01272 188 MobiDBLite consensus disorder prediction 62 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01272 - - - cpep:111801590 362.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00607 Cma-Chr6:2945528 Cma18g01272 Cma-Chr18:9877833 2.82E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g772 . . . . Bpe03g00156 . . Bma14g02041 . Cmo18g01303 . . . . . . . . . . . . . . . . . . . . . Cone1ag1194 . . . Lsi05g01189 . . . . Blo09g00060 . . . . . . . . . . Cma18g01272 . Car18g01185 Cpe09g00064 . . . . . . . . Cla05g00918 Cam05g1006 Cec05g1010 Cco05g1006 Clacu05g0993 Cmu05g0949 Cre05g1030 . . Chy06g00979 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012150 0 0 1 1 2 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01272 Cma_Chr18 FPKM 3.433862 6.638455 16.105494 18.951965 190.901855 156.350403 181.351349 13.622067 12.193395 12.683276