Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01276 ATGGCGCACTCTCTTGTTCCAGCATCGCTCTCGTCCGCCTTGGCTTCCAACCGGATGCATACTTTGATTTACTCTTTTCCCGTCATATCCAAAGGGATTGAATCTGTTAAATTTTCGTTGATTGCAAGTGCAAGAAGTTCAGTGGTATGTGCTGCAAAAGGTCCACGGCCGAGATATCCTCGGGTGTGGAAAACCAGGAAGAGGATTGGGACCATATCCAAGGCAGCAAAGCTCGTTGATTGTGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAAAAGGCCCTAAAGACCTTAGAGATCCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGTAGCTATTTCACATTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTATTTTCTCAGCATTTGGAGAGCATGCCTCGCATATTCTTCCATAAAATGATATCCCTTTACTATGAACGGGATATGCACGACAAGCTATTTGAGATATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAGTATGGCAATTGTCACTATGCTCGGAGATGTCTTCCAAAAGTTGGGTATGTTAGATAAATGTGAAAAATTGAAGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACATAAGAGGAAAGCGCGTAAAAATACGAGCAAAGAATCTGCACGAAAATGGTAGTTCCAACAATGGTTCAGGTGAACTCGACAAAAAGGAGCAAAGTTCAACTGAAGAACTGTTGGAGGAAGATGAAACAACTTCCCAAGATTCGAGTCTTGAAGATGATGAAATGAGTGAAGACCGAGATGAAGTCTTGGAAGATGAAAGTATGTTGTTGAAAGAATCCACTTTTGAGCACGATTTCATGGGATTTGGACAATTGTAA 1005 41.19 MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASARSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGDVFQKLGMLDKCEKLKKKYPPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEQSSTEELLEEDETTSQDSSLEDDEMSEDRDEVLEDESMLLKESTFEHDFMGFGQL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9893415 9895786 + CmaCh18G012760.1 Cma18g01276 314614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01276 334 MobiDBLite consensus disorder prediction 285 312 - -
Cma18g01276 334 MobiDBLite consensus disorder prediction 261 319 - -
Cma18g01276 334 MobiDBLite consensus disorder prediction 262 276 - -
Cma18g01276 334 Gene3D Tetratricopeptide repeat domain 76 319 IPR011990 GO:0005515
Cma18g01276 334 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Cma18g01276 334 PANTHER OS01G0757700 PROTEIN 24 309 - -
Cma18g01276 334 PANTHER OS01G0757700 PROTEIN 24 309 IPR044646 -
Cma18g01276 334 Pfam PPR repeat 185 210 IPR002885 -
Cma18g01276 334 Pfam PPR repeat 148 169 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01276 - - - cmax:111467557 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00180 Cma-Chr4:874653 Cma18g01276 Cma-Chr18:9893415 2.64E-55 dispersed
Cma18g01276 Cma-Chr18:9893415 Cma16g00448 Cma-Chr16:2236071 1.75E-06 dispersed
Cma18g01276 Cma-Chr18:9893415 Cma12g01030 Cma-Chr12:8182671 5.42E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g784 . . Bda05g00096 . Bpe03g00260 . Bma10g01260 . . Cmo18g01307 . . . . Sed07g2526 . . Bhi01g01417 Tan01g0183 Cmetu10g1018 . Hepe07g0115 Mch10g0118 . . . . . . . . . . Cone14ag0053 . Lsi05g01184 . . Cme06g01045 Blo07g00369 . . . . . . . . . . . Cma18g01276 . Car18g01190 Cpe09g00061 . . . . . . . . Cla05g00923 Cam05g1011 Cec05g1015 Cco05g1011 Clacu05g1000 Cmu05g0953 Cre05g1034 . Csa03g01757 Chy06g00985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010882 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01276 Cma_Chr18 FPKM 2.433333 4.404092 5.237783 6.43916 16.840687 16.859409 17.796211 6.701275 8.060486 8.66065