Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01277 ATGGCGACGTCTGAAGAGAATAGTGCATTGTTCCCAATCTTTATTTTGACAATAATGGCACTGCCTTTAGTGCCTTATACAATTCTTAAGCTCTGCCGTGCCGCTTCAAAGAAGGCAAAGATTATACATTGCCAGTGTTCTGAATGCTCCCGTTCAGGGAAGTATCGCAAGTCAATATTCAAGCGGATAGCAAATTTCTCCACATATAGCAACTTGACACTAGTACTTCTTTGGATCTTCATGTTCGTATTGGTCTATTACATTAAAAATATAAGCCGCGAGATTCAAGTCTTTGAGCCGTTTAGTATTCTGGGACTGGAAACTGGGGCTTCGGATGTGGATATAAAGAAGGCATACAGGAGACTTTCTATCCTATACCATCCAGATAAAAATCCGGATCCAGAGGCCCACAAATATTTCGTGGAGTTCATATCTAAGGCTTATCAAGCTTTGACAGATCCAATATCCCGTGAGAATTATGAAAAATATGGCCATCCAGATGGCAAGCAGGGGTTTCAAATGGGAATTGCACTCCCTCAATTCTTACTAAATATCGATGGGGCATCTGGTGGGATACTTTTACTGTGGATTGTTGGAGTTTGTATTATCTTGCCTTTGGTAATAGCCGTTATATATCTTTCAAGGTCGTCCAAATACACTGGAAACTATGTCATGCGTCAGACACTTTCCACATATTATTACTTCATGAAGCCTTCTTTGGCACCAAGCAAAGTAATGGATGTCTTCATTAAGGCAGCTGAGTATGTGGAAATGCCAGTTCGTAGGACTGATAATGATCCTCTTCAGAAGATATTTGGACTAGTTAGGAGTGAGTTGAATCTTGACCTTAAGAACATTAAACAAGAGCAGGCGAAGTTTTGGAAGCAACATCCAGCCCTTGTTAAAACACAATTGTTGATCCAAGCTCAATTAACTCGTGAATTTGCCAACTTGCCTCCACCCTTGGACAGTGACTTTAAACATGTGCTGGAACTTGCTCCTCGCCTTCTTGAAGAATTAATGAAGATGGCACTGATCCCACGGAACGTCCAAGGACAAGGATGGCTACGTCCTGCAACTGGGGTCATTGAGCTCTCACAATGTATCATTCAGGCTGTTCCTCTTAGTTCAAGAAAGGCCACTGGAGGATCCTCCGATGGTATTGCACCATTTCTACAGCTGCCGCATTTCAGCGAGGCTGTTGTCAAGAAGATAGCCCGTAAGAAAGTGAGAGCGTTTGAGGACCTTCAGAAGCTGACTCAAGAAGAGCGTGCCGAGCTGCTTGCGCAGGTGGGTGGTTTCTCGCCGGCTGAAGTACAAGATGTTGAAACGATGCTGGAAATGATGCCTTCCGTTACAGTTACTATCTCATGTGAAACAGAAGGTGAAGAGGGTATCCAAGAGGGTGATACTGTCACCATTCAAGCTTGGGTGACACTCGAACGCCGTAATGGGCTGGTGGGTGCTCTCCCACATGCTCCCTACTACCCCTTTCACAAAGAAGAAAACTTCTGGTTCCTACTTGCAGACCCAAACTCGAACAATGTTTGGTTTTACCAGAAGGTTAGTTTCATGGATGAGGCTACGGCCATAACTGCAGCTTCCAAGGCAATCGAAGAACAAATGGAGGGATCTGGAGCAAGTGTGAAGGAAACTAGTGCTGCAGTTAGGGAAGCGGTAGAAAAGGTAAAAGCGGGATCGAGATTGGTTCTAGGCAAGTTCCATGCCCCAGCTGAGGGGAACTACAATTTGACTTGTTACTGCCTGTGTGATTCTTGGATTGGTTGCGATAACAAGACAAATCTGAAATTGAAGATATCAAAACGAACCCGTGCGGGTACCCGTGGTGGCTTTATTGCAGAAGAAGGACCAAGTATGGAGGATGGAATTGAAGAGGAAGAGGAAAATGATGAAGAAGAATATGATGATTACGAGAGCGAGTACAGCGAAGACGAAGCTGATGAACAAAATGTGAAAAAGAAGGGCCCTGTTGCCAATGGAAAAGCGCATAAACAGCAGAGTTCAAGTTCAGAAGGCTCTGGTTCTGATGATGAATGA 2058 44.17 MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCSECSRSGKYRKSIFKRIANFSTYSNLTLVLLWIFMFVLVYYIKNISREIQVFEPFSILGLETGASDVDIKKAYRRLSILYHPDKNPDPEAHKYFVEFISKAYQALTDPISRENYEKYGHPDGKQGFQMGIALPQFLLNIDGASGGILLLWIVGVCIILPLVIAVIYLSRSSKYTGNYVMRQTLSTYYYFMKPSLAPSKVMDVFIKAAEYVEMPVRRTDNDPLQKIFGLVRSELNLDLKNIKQEQAKFWKQHPALVKTQLLIQAQLTREFANLPPPLDSDFKHVLELAPRLLEELMKMALIPRNVQGQGWLRPATGVIELSQCIIQAVPLSSRKATGGSSDGIAPFLQLPHFSEAVVKKIARKKVRAFEDLQKLTQEERAELLAQVGGFSPAEVQDVETMLEMMPSVTVTISCETEGEEGIQEGDTVTIQAWVTLERRNGLVGALPHAPYYPFHKEENFWFLLADPNSNNVWFYQKVSFMDEATAITAASKAIEEQMEGSGASVKETSAAVREAVEKVKAGSRLVLGKFHAPAEGNYNLTCYCLCDSWIGCDNKTNLKLKISKRTRAGTRGGFIAEEGPSMEDGIEEEEENDEEEYDDYESEYSEDEADEQNVKKKGPVANGKAHKQQSSSSEGSGSDDE 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9896245 9900682 - CmaCh18G012770.1 Cma18g01277 314615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01277 685 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Cma18g01277 685 SMART dnaj_3 98 156 IPR001623 -
Cma18g01277 685 SMART Sec63_2 209 604 IPR004179 -
Cma18g01277 685 MobiDBLite consensus disorder prediction 625 652 - -
Cma18g01277 685 MobiDBLite consensus disorder prediction 615 685 - -
Cma18g01277 685 Gene3D DnaJ domain 99 182 IPR036869 -
Cma18g01277 685 Gene3D - 218 373 - -
Cma18g01277 685 Coils Coil 402 422 - -
Cma18g01277 685 PRINTS DnaJ domain signature 101 119 IPR001623 -
Cma18g01277 685 PRINTS DnaJ domain signature 119 134 IPR001623 -
Cma18g01277 685 PRINTS DnaJ domain signature 136 156 IPR001623 -
Cma18g01277 685 PRINTS DnaJ domain signature 156 175 IPR001623 -
Cma18g01277 685 SUPERFAMILY Sec63 N-terminal domain-like 244 450 - -
Cma18g01277 685 Coils Coil 627 661 - -
Cma18g01277 685 PANTHER SEC63 DOMAIN-CONTAINING 1 676 - -
Cma18g01277 685 Gene3D C2 domain 451 613 IPR035892 -
Cma18g01277 685 SUPERFAMILY Chaperone J-domain 97 192 IPR036869 -
Cma18g01277 685 Gene3D - 389 448 - -
Cma18g01277 685 Pfam Sec63 Brl domain 222 602 IPR004179 -
Cma18g01277 685 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 676 - -
Cma18g01277 685 Pfam DnaJ domain 100 161 IPR001623 -
Cma18g01277 685 CDD DnaJ 99 153 IPR001623 -
Cma18g01277 685 SUPERFAMILY E set domains 454 606 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01277 K09540 SEC63, DNAJC23; translocation protein SEC63 - csv:101209193 1243.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00092 Cma18g01277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01277 Cma-Chr18:9896245 Cma14g00051 Cma-Chr14:221645 1.96E-13 dispersed
Cma01g02050 Cma-Chr1:13012098 Cma18g01277 Cma-Chr18:9896245 1.27E-16 transposed
Cma13g01078 Cma-Chr13:8137463 Cma18g01277 Cma-Chr18:9896245 2.64E-09 transposed
Cma16g00092 Cma-Chr16:405179 Cma18g01277 Cma-Chr18:9896245 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01277 Cma_Chr18 FPKM 23.679453 24.175819 27.43014 25.747143 17.444536 18.643204 16.227638 32.737984 29.624006 28.798365