Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01280 ATGGCGTCCGATCTCGAAGCCAGGGCTAAGGAGGCGTTTATCGATGACCATTTCGAACTTTCCGTCGAGCTCTACACTCAGGCCATCGCTCTTAGTCCCAAGAAAGCCGAGCTTTACATTGACCGCGCTCAGGCCAACATCAAACTCGGCCATTACACCGAGGCTGTCGCTGATGCTAACAAAGCAATTGAACTTGACCCTTCAAATTCAAAAGCATACTTGCGCAAAGGCACTGCGTGTCTGAAGCTCGAGGAATATCAAACAGCGAAGGTTGCCTTGGAGACAGGTTCTGCTATGGCCTCAGGAGATTCAAGATTCTCGAGTTTAATTAAAGAATGTGAAAAACTCATTGCCGAGGAAATGGGCGATCTTCCGCAGGAATCCGTGGAAGAAACTGTTCAGGAACCTGTTTTACCAACAAATAATGTTGTACCTGTGAGTGATCAATTGCATCAGGCAACAATTGAAGCCAAACCGAAATTCAGGCATGAATTTTATCAGAAGCCTGAAGAAGGGGTTGTGACCATATTTGCGAAGGGCATACCAGCTGAAAATGTTGCTGTTGAATTTGGTGAACAAATTTTGAGTGTTACTATCAATCTTCCTGGTGAAGATGCATATCGTTTCCAGACTCGTTTATTTGGGAAGATAATACGCGAGAAGTGCAAATTTTTGGTTTTATCTACGAAAATTGAAATTCGTCTAGCAAAGGCTGAGCCAATAACCTGGACGAGTCTTGAATTCAAAAAGGATAATAGAATTACCCAGAGCATTAGGGTCCCCGCTAGTGGATCTCAGAGGCCTTCTTACCCCTCCTCTAAGCCCAAAAGAGATTGGGATAAAATTGAAGCTGAAGTGAAAAAGGAGGAGAAAGACGAAAAACTAGATGGGGATGCAGCTTTGAACAAGTTTTTCCGAGACATATACAAGGACGCTGACGAGGATACGAGAAGGGCCATGCAAAAATCATTTGTGGAGTCGAATGGCACGGTCCTGTCCACGAACTGGAATGAGGTGGGGAAGAAGAAGGTGGAAGGTAGCCCTCCAGATGGTATGGAGTTGAAGAAATGGGAGATCTGA 1080 44.91 MASDLEARAKEAFIDDHFELSVELYTQAIALSPKKAELYIDRAQANIKLGHYTEAVADANKAIELDPSNSKAYLRKGTACLKLEEYQTAKVALETGSAMASGDSRFSSLIKECEKLIAEEMGDLPQESVEETVQEPVLPTNNVVPVSDQLHQATIEAKPKFRHEFYQKPEEGVVTIFAKGIPAENVAVEFGEQILSVTINLPGEDAYRFQTRLFGKIIREKCKFLVLSTKIEIRLAKAEPITWTSLEFKKDNRITQSIRVPASGSQRPSYPSSKPKRDWDKIEAEVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWNEVGKKKVEGSPPDGMELKKWEI 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9907780 9911163 + CmaCh18G012800.1 Cma18g01280 314618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01280 359 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
Cma18g01280 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Cma18g01280 359 PANTHER PHOSPHATASE-RELATED 1 358 - -
Cma18g01280 359 ProSiteProfiles SGS domain profile. 269 359 IPR007699 -
Cma18g01280 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Cma18g01280 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Cma18g01280 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Cma18g01280 359 Gene3D - 153 260 IPR008978 -
Cma18g01280 359 Pfam Tetratricopeptide repeat 36 69 IPR013105 -
Cma18g01280 359 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Cma18g01280 359 CDD p23_CS_SGT1_like 164 247 - -
Cma18g01280 359 Pfam SGS domain 277 357 IPR007699 -
Cma18g01280 359 SUPERFAMILY TPR-like 4 114 IPR011990 GO:0005515
Cma18g01280 359 MobiDBLite consensus disorder prediction 340 359 - -
Cma18g01280 359 Pfam CS domain 162 237 IPR007052 -
Cma18g01280 359 ProSiteProfiles TPR repeat region circular profile. 36 69 - -
Cma18g01280 359 MobiDBLite consensus disorder prediction 343 359 - -
Cma18g01280 359 SUPERFAMILY HSP20-like chaperones 153 251 IPR008978 -
Cma18g01280 359 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01280 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - csv:101208950 603.979
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00091 Cma18g01280 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00472 Cma-Chr18:2655392 Cma18g01280 Cma-Chr18:9907780 1.06E-06 dispersed
Cma18g01280 Cma-Chr18:9907780 Cma11g01949 Cma-Chr11:12806464 2.40E-15 dispersed
Cma18g01280 Cma-Chr18:9907780 Cma16g00091 Cma-Chr16:401467 4.84E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01280 Cma_Chr18 FPKM 63.202389 70.083023 81.849113 80.331444 77.120789 72.019066 71.395012 122.700447 124.263123 119.009163