Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01288 ATGGCTGTAGCTGCTTCTTCGTCTTCTCGCGATGGCTCGTGGGTCATGTTCGCTTTGGCTGTTGTATGGCTGATTCGGGCTTGCATGGCTAGCCAAATTGTTATTGGAGCGAGGTTGGTTGCTGGTGATCGTGAGAGAAACGCTTGGGTTTCTGATAATAGTACTTTTGCATTCGGGTTTAGTTCGGCTAATAGTGGCACGGTTGATCGATTTCTACTTGCCATATGGTTCGCCAAGCTTCCCGGGGATCGAACCGTGGTTTGGTCAGCTAACAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGTTTGATGCCACCGGAAACCTCGTCCTCATCGACGGTGGCGCCACCGTCTGGTCTTCCAACACCTCCGGAGACGGAGCGGAGTTCGCCGTCATGTCAGAATCTGGCAACTTCATCCTCTTCAACGCCGAGCGAATCCCTATTTGGCAAAGCTTTTCACACCCATCTGATACGCTTCTCCCAAATCAACCTCTATCAGTGTCTTTAGAGCTTACAACTTCAAAATCCCTCTCCCATGGCGGATATTATGCCCTTAAAATGCTCCAACAACGCACCACTCTCAAACTCGCCTTGACATTCAATTTGCCTGAAAATTATGCGGGGTTGCCCGAATCTTACTCAAATTACTCCTACTGGTCCGCCCCTGCCATTTCCAATGTAACAGGGGAAGTCATCGCTGTTCTAGACGAAGGCGGAAGCTTCGGTGTGGTCTATGGCGACTCCGCTAATGGCGCTGTGTATGTTTACAAGAACGATAACGACAATGGGGGATTGTCGGCGTCGACAAATCAGTCGATTCGAAATGTACGCACGCAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGACGATGATGTTAATGGGTCTCGCCAATGGGTGCCGGAATGGGCGGCGGTTTCAAATCCTTGTGATATTGCCGGAATCTGTGGAAATGGGATTTGCTATTTGGATAGAAGTAAGACAAATGCGACTTGTTCTTGCTTGCCGGGGACTTTTAAGGACGCCGGCGGTAGCCAGTGCTTTGAGAATTCATCGTCGGTGGGTAAATGTGACGGCCAACATCATCAATCTCCGGCGACCCAGTTCAGGATTTCTCCAGTTCAGCAAACAAATTACTATTACTCTGAGTTCTCTGTTATTGCAAATTACAGTGATATCGACACTGTTGCCAAATGTGGCGATGCTTGCTTGTCTAATTGTGAGTGTGTTGCCTCTGTTTATGGGCTTGATGAAGAGAAACCTTATTGTTGGGTGTTGAGAAGCTTAGATTTTGGGGGGTTTGAGGATGCTGGTTCGACTCTGTTTGTGAAGGTTAGGTCCAATGGGTCAATACCAGAAGCCAATAGGCCAAGAACTGATAGAGATTCTTCAGGAAGTGCTAAGCAAAAGGCTACGATTATTCCTATTGTTTTGAGTATGGCTTTTCTGATTGGGTTGCTGTGTTTGTTGTTATATTATAATGTTCATAGAAGAAAGGTTTTAAAGAGAGCCATGGAGAGCTCTCTGATCTTGTCTGGAGCTCCTATGAGCTTCACACACCGCGATTTGCAGATCCGGACGAACAATTTCTCCGAGCTTCTTGGAACAGGTGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTGGTAGCTGTAAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAACACTATTGGATCTATGCATCACATGAACCTGGTTCGCCTCTGCGGATACTGCTCGGAAGGGTCGCATAGGCTTCTGGTGTATGAATTCATGAAAAATGGGTCAGTGGACAAATGGATATTTCCTTCACATCATAATCAAGACAGGATTTTAGATTGGTCGACTCGGTTTCACGTAGCCATCGGCACGGCGCAAGGGATCGCTTATTTTCATGAACAATGCAGAAACAGGATCATACATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTCTGCCCCAAAGTTTCGGACTTTGGTCTGGCTAAGCTGATGGGACGAGAGCACTCGCACGTCGTAACGATGGTGAGAGGGACGAGAGGGTATTTGGCTCCGGAGTGGGTTAGTAATCGCCCCATCACGGTTAAAGCTGATGTTTATAGCTATGGAATGCTTCTCTTGGAGATTGTTGGTGGTAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCAGGTTGGGCATACAAGGAGATAAAGAATGGAACTCATTTCAAAGTGGCAGATAGGCGGCTAGAGGGTGCAGTGGATGGAGAAGAGCTAATGAGAGCATTGAAAGTTGCATTTTGGTGCATACAAGATGAAGTTGTCATGCGACCGACGATGGGCGAGGTCGTGAGAATGTTGGAAGGATCGAGTGAGGTCGAGACGCCGCCAATGCCACAAACAGTGGTGGAGATGATTGAGGAAGGCTTGGATCAAGTTTATAGAGCCATGAAAAGAGATATCAATCAGTCAAGTTCCTTCACCATTAATACCCAACCTTCTTCATCTTTGGCTACTTGCAGTCATTCCACAATCTCTCCAAGATAG 2616 46.52 MAVAASSSSRDGSWVMFALAVVWLIRACMASQIVIGARLVAGDRERNAWVSDNSTFAFGFSSANSGTVDRFLLAIWFAKLPGDRTVVWSANRNSPVSKNAIVEFDATGNLVLIDGGATVWSSNTSGDGAEFAVMSESGNFILFNAERIPIWQSFSHPSDTLLPNQPLSVSLELTTSKSLSHGGYYALKMLQQRTTLKLALTFNLPENYAGLPESYSNYSYWSAPAISNVTGEVIAVLDEGGSFGVVYGDSANGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDRSKTNATCSCLPGTFKDAGGSQCFENSSSVGKCDGQHHQSPATQFRISPVQQTNYYYSEFSVIANYSDIDTVAKCGDACLSNCECVASVYGLDEEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPEANRPRTDRDSSGSAKQKATIIPIVLSMAFLIGLLCLLLYYNVHRRKVLKRAMESSLILSGAPMSFTHRDLQIRTNNFSELLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSVDKWIFPSHHNQDRILDWSTRFHVAIGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEIKNGTHFKVADRRLEGAVDGEELMRALKVAFWCIQDEVVMRPTMGEVVRMLEGSSEVETPPMPQTVVEMIEEGLDQVYRAMKRDINQSSSFTINTQPSSSLATCSHSTISPR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9934233 9938423 + CmaCh18G012880.1 Cma18g01288 314626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01288 871 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Cma18g01288 871 Pfam S-locus glycoprotein domain 273 347 IPR000858 GO:0048544
Cma18g01288 871 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 17 871 - -
Cma18g01288 871 Gene3D Transferase(Phosphotransferase) domain 1 614 829 - -
Cma18g01288 871 PIRSF SRK 9 863 IPR024171 GO:0004674
Cma18g01288 871 Pfam Protein kinase domain 541 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01288 871 CDD B_lectin 50 157 IPR001480 -
Cma18g01288 871 Gene3D - 29 156 IPR036426 -
Cma18g01288 871 PANTHER OS07G0415500 PROTEIN 17 871 - -
Cma18g01288 871 Gene3D Phosphorylase Kinase; domain 1 503 613 - -
Cma18g01288 871 CDD STKc_IRAK 544 812 - -
Cma18g01288 871 Pfam D-mannose binding lectin 85 175 IPR001480 -
Cma18g01288 871 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Cma18g01288 871 ProSiteProfiles Protein kinase domain profile. 538 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01288 871 SMART serkin_6 538 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01288 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Cma18g01288 871 SMART blect_4 38 157 IPR001480 -
Cma18g01288 871 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 159 IPR036426 -
Cma18g01288 871 MobiDBLite consensus disorder prediction 848 871 - -
Cma18g01288 871 SUPERFAMILY Protein kinase-like (PK-like) 518 811 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01288 - - - bhj:120087538 1573.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00458 Cma-Chr9:2009015 Cma18g01288 Cma-Chr18:9934233 1.06E-142 dispersed
Cma15g00558 Cma-Chr15:2602156 Cma18g01288 Cma-Chr18:9934233 2.91E-148 dispersed
Cma18g01288 Cma-Chr18:9934233 Cma19g00953 Cma-Chr19:8438217 2.01E-144 dispersed
Cma18g01288 Cma-Chr18:9934233 Cma12g00340 Cma-Chr12:1727841 1.52E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g816 . . . . . . . . . Cmo18g01317 . . . . . . . Bhi01g01427 . . . . . . . . . . . . . . . . . . . . Cme06g01057 . . . . . . . . . . . . Cma18g01288 . Car18g01206 . . . . . . . . . Cla05g00933 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69324 PF00069 Pkinase 2.00E-45 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01288 Cma_Chr18 FPKM 0.270378 0.436255 0.701833 0.791456 1.506254 1.467173 1.582491 0.363495 0.206392 0.330763