Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01290 ATGTCTCAGGTGGTGGCTACGAGGTCGATTCACAGCACAGTCCCGTGCCATGGCTCGGGATCTGTGCTGGACCGGGTGAACAGAGCTCGGTCTTTTGGCATTGGCTCCAAAGTGTTGGCGCATGAGAAGAAGAAAAGGAATTTTGTTTGCAGGAGAAGTCTAATCACAGCCAAGAGAGCTGCTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATATTCAGAAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAACTCGGTGATACACCGGTCGGAATGTGGTCCAAACCAACAGTTAGACGTAAGACAAAAATCGTGTGCACAATTGGACCTTCAACTAACACGAAGGAAATGATTTGGAAGCTGGCTGAGGCTGGAATGAACGTTGCCCGATTGAATATGTCTCATGGAGACCATGCATCTCATCATAAAGTTATAGATTTAGTCAGAGAATACAATGCCCAATGTAAGGACAACTGCATTGCAATCATGCTCGATACCAAGGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAGGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTGCAGACTCTGTTAGCGTGAACTATGATGATTTTGTTAATGATGTAGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGTTCATGGTGAAGTCTAAGACAGAGGATTCTGTTAAGTGTGAAGTTATTGATGGTGGCGAGCTCAAATCCAGGCGACATTTAAATGTTCGAGGGAAAAGTGCAACACTGCCTTCCATTACTGAGAAGGATTGGGATGACATAAAATTTGGAGTTGACAACAAAGTTGACTTTTATGCTGTCTCGTTTGTTAAAGATGCACAAGTAGTTCATGAGTTGAAAAAATATCTTAAAAGCTGTGATGCTGATATTCATGTCATTGTAAAAATAGAAAGTGCCGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCAAGAGGCGATCTTGGTGCAGAACTCCCTATTGAAGAAGTTCCACTTCTGCAGGAGGAGATAATCAACTTGTGTCGAGGCATGGGGAAGGCTGTCATTGTTGCAACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGAGCAGAAGTATCTGATATTGCTATTGCAGTTAGAGAGGGGGCCGATGCAATCATGCTCTCTGGAGAAACAGCTCATGGAAAATTCCCATTGAAAGCTGTGAAAGTAATGCATACAGTTGCCTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTGAATCTCGGTCAAACATTCAAGAACCATATGAGTGAGATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAAAACTGGTTTCATGGCCATCCTTCTAAGCCATTACCGACCATCTGGGACAACATTTGCTTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTATATCAGGGAGTGTGCCCCATATACATGCAGTTCTCTGATGATGCTGAGCAGACCTTTGCCGATGCCTTATCTCTGCTACAGAGGCAAGGAATGGTAAAGGAAGGAGAAGAGGTGGCACTCCTTCAGAGTGGCAGACAACCCATATGGCGGTTCCCATCTACCCACAATATTCAAGTCCGTAAAGTGTAG 1722 43.79 MSQVVATRSIHSTVPCHGSGSVLDRVNRARSFGIGSKVLAHEKKKRNFVCRRSLITAKRAAQAEVVPVSPEDIQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHHKVIDLVREYNAQCKDNCIAIMLDTKGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMLLVDGGMMSFMVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTKTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMQFSDDAEQTFADALSLLQRQGMVKEGEEVALLQSGRQPIWRFPSTHNIQVRKV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9940941 9945794 + CmaCh18G012900.1 Cma18g01290 314628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01290 573 SUPERFAMILY PK C-terminal domain-like 422 573 IPR036918 -
Cma18g01290 573 Pfam Pyruvate kinase, alpha/beta domain 461 553 IPR015795 -
Cma18g01290 573 Gene3D - 174 267 IPR015806 GO:0004743|GO:0006096
Cma18g01290 573 PANTHER PYRUVATE KINASE 35 573 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PANTHER PLASTIDIAL PYRUVATE KINASE 2 35 573 - -
Cma18g01290 573 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
Cma18g01290 573 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 TIGRFAM pyruv_kin: pyruvate kinase 104 570 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma18g01290 573 Gene3D - 106 431 IPR040442 -
Cma18g01290 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 95 438 IPR015813 GO:0003824
Cma18g01290 573 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Cma18g01290 573 Gene3D - 446 573 IPR036918 -
Cma18g01290 573 Pfam Pyruvate kinase, barrel domain 104 439 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01290 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 1063.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00086 Cma18g01290 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01598 Cma-Chr2:9076503 Cma18g01290 Cma-Chr18:9940941 0 dispersed
Cma17g00198 Cma-Chr17:1039692 Cma18g01290 Cma-Chr18:9940941 5.25E-127 dispersed
Cma18g01290 Cma-Chr18:9940941 Cma19g00449 Cma-Chr19:5417607 0 dispersed
Cma16g00086 Cma-Chr16:369796 Cma18g01290 Cma-Chr18:9940941 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01290 Cma_Chr18 FPKM 22.027988 21.465874 13.108336 13.582803 64.101532 72.007858 67.809532 46.541508 45.417896 40.564529