Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01291 ATGGAGGACTTATGGGGTGTGTTCTGTGGAGGACATGAATGTTCAAGTGGTAGTGAGAAACCTTGTGGCTTTCTTTCTGATTCCTCTTCATGTAATACTCAAGCCTTGTTCATCTGTTTTGATTTTCTACTGTTGATCTTGCTTGTATCCAATATTGTGGGGAAGTCAGTGAAAAGACCTCACATGTCGAATCGAATTCGAAGTCGTTCTGCTTTGCAAATTTTGTCTGCTATCTTCAATGGTTGTGTTGGATTAGTGTACCTTGGCCTGGGAATTTGGATTCTGGTGGAGAAATTGAGTAAAGATCATACTGCTTTGCCTTTACAGCTGTGGTTATCTGCCACCGTCCATGGCTTCACATGGTTATTGGTGAGCTCCGTTATTAGCTTCTGGTGTAAACAGTTTCCAAGATCCTTGTTGCGCTTATTGTCCATTGCAGCATTCGTGTTTACTGGAGTTATTTGTGTTCTATCAGTTTTCGATGCTGTTTCGAACAAAAAATCATCAGCAAAGATGATTTTAGATGTTCTATCTGTTCCAGGATCAGTTCTGTTATTGATCTGCGCTTTTGGGTGTTTTTCCCGTGACGAGAGCGAGACAAGTATCAATGGGAATGGACTTTACACCCCACTAAATGGTGAGGCCAATGAAAGTGATAAGGTTGATCTTGTTACTCCATTAGCTCAAGCTGGATTGTGGAGTAAATTTTCGTTTTGGTGGATGAATCCTTTAATGAAAAAGGGGAAGGAAAAGACTCTGGACTACGACGATATACCAATGATGTGCGAAGAAGATCGTGCAGGAAGTTGCTACTTGCAGTTCACAAACAAAATTAACGAGCTGAAAAAAAAAGAACCAAATTCCCAACCATCAGTCTTAAGAGTCATCATTTTATGCCATTGGAAGGACATATTATTGTCTGGTTTTTTCGCTTTGTTGAAGATACTCTTTCTGTCTGCTGGTCCTCTGCTTCTAAATTCCTTTATCTTAGTTGCTCAGGGACATCAAAGCTTCAAATACGAAGGTCTTGTGCTTGCCCTTTCACTTTTCTTCTCGAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAAGCAGGCTTGTTGGTCTAAAAGTCAGGTCTATGCTTTCAGCAGCCATTTATAAGAAGCAATTGAGATTGTCCAACGAAGCTAAGTTGACGCACTCGAGCGGTGAAATCATGAACTATGTGACCGTGGATGCATACAGGATTGGAGAGTTTTCATATTGGTTCCACCAAACTTGGACCACGAGTCTTCAGCTCATTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATTGCCTCCTTTTTGGTAATAATTCTATGTGTAATTGGCAACACTCCAATTGCCAAGCTACTGCATAAGTATCAGAGTAAATTGATGGCTGCACAAGACGAGCGACTGAAAACGTTCACCGAGGCTCTTGTGAACATGAAGGTTTTGAAGTTATATGCTTGGGAATCCCATTTCAGGAATGTAATTGCGAAGTTAAGAGAAGTGGAGCACAAGTGGTTGTCATCTGTGCAAATTCGAAAAGGATACAATGGTATTCTCTTTTGGTCATCTCCTGTCATCGTATCTGTTGCAACCTTTGGGGCTTGTAGCCTTTTGGACATTCCGCTACATGCCAATAATGTTTTCACCTTTGTGTCTACGCTGCGCCTTGTTCAAGATCCTGTTAGATCTATGGCTGATGTCATTGCAGCGATTATTCAAGCACGGGTTTCATTTACGCGTATCGTTAACTTTCTAGAGGCACCAGAGCTGCAAGGTACAAGTGTTTGTAGAAAACGCATTAACACGAATGATAACTACTCCATTAAGATCAGTTCAGCATCTTTCTCATGGGAAGAGAACTCCTCGAAGCCGACTCTTCGTAATATAAATCTCGAGGTCAGATCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCATTCTTGGTGAAGTTCCAAATGTTGAGGGAAATATGCAAGTTTATGGAAGGCTTGCCTATGTGTCTCAAATAGCATGGATCCAAACAGGAACCATACGAGACAACATCTTATTTGGCTCTCAAATGGACAGCTGGAGGTATCGAGAAACACTCGAGAAGTGTTCGTTGGTGAAGGACCTCGAGTTGCTTCCTTATGGTGACCTCACTGAGATTGGGGAGAGAGGAGTGAACCTCAGTGGTGGCCAAAAGCAGAGGATTCAACTCGCACGTGCGCTGTATCAAGATGCTGATATATATCTTTTGGATGATCCGTTTAGTGCTGTGGATGCACATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCTCTCTCGAGTAAAACGGTTCTTCTCGTGACTCATCAAGTCGATTTCCTGCCTGATTTTGATTCTGTTCTGCTAATGTCGGACGGGGAAATTCAAGAAGCAGCCCCTTATCATCATTTGTTGGCACATAGCAAAGAGTTTCAGGATCTTGTCCATGCACACAAAGAGACTGCTGGTACTGAAAGGCTTGCAGATTTTTCTGCCACCAAGAGTTTGATAACATCAAGTAAAGAGATTAAGAAATCTTATACAGAGAAACTGTCCGTAACATCTGATGCTAATCAGTTAATTAAGCAGGAGGAGCGAGAAGTCGGTGACTCGGGATTCAGGCCTTATATTCAGTATCTGAATCAGAGCAAAGGGTTCATCTTCTTCTCCTTAGATGTTCTCTCCCAATTAGCATTTGTGGCATGTGGAATAATGCAAAACTCTTGGATGGCTTCGAATGTCGACAATCCCAACGTCAGCAACTCCCGCTTGATCCTCGTTTACTTGTTGATTGGAATTATTTCAACATTGTTCTTGGTTACTAGATCTCTTTTCACAGCTCTTTTAGGTTTGGAATCATCAAAATCATTATTTTCTCAGCTACTAACATCTCTTTTTCGCGCACCGATGTCCTTCTATGACTCCACACCTATTGGAAGGATACTTAGTCGAGTCTCAATGGATCTTAGTATTGTAGATCTTGATGTCCCATTCAGTTTAATATTTGCTGTTGGTGCAACCTCCAATGCCTATGCTGCTCTCGGCGTTTTAGCTGTAATCACGTGGCAAGTACTATTCATCTCCATACCGACAGTCGTTTTGGCGATTTGCTTGCAGAGATACTACTTTGCATCTGCTAAAGAACTCATGCGTCTTAACGGGACAACGAAGTCGATGGTAGCAAATCATTTGTCTGAATCCGTAGCTGGATCAATGACAATACGAGCTTTTGAAGAGGAAGAGCGATTCTTTAAGAAAAACCTTGAATTCGTCGATGGAAATGCCAGTCCTTTCTTCCACAATTTTTCGGCCAATGAGTGGCTGATACAACGGTTGGAAATGCTCAGCGCGGTCGTCCTTGCCTCGGCTGCATTGTGCATGGTGTTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCGATCTCTTATGGCCTTTCTTTAAATGTGTCCTTGGTCTTCTCCATCCAGAATCAATGTACTATAGCTAATCACATCATTTCTGTGGAAAGATTAAACCAATACATGCACTTACCGAGTGAAGCTCCGGAGATCATCGAAGAGAGACGTCCCCCAACCAACTGGCCCTCTGTTGGCAAAGTCGAGATAATTGACTTGAAGATACGATACCGACCCAATACACCCCTTGTTCTTCATGGTATAAGCTGCACATTTGAAGGAGGACATAAGATTGGCATTGTTGGGCGGACTGGCAGTGGAAAGTCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCGGTGGGAGGAAAAATTTTAGTTGATGGTATCGACATCTGCTCGATTGGACTTCATGACCTGCGGTCACGTTTCGGGATCATACCTCAAGATCCAACCCTTTTTAAAGGGACTGTTAGATACAATTTGGATCCTTTAGTTCAGCATACTGATGATGAAATATGGGAGGTGCTCGGAAAGTGTCAACTTAGAGAGGCTGTTGAAGAGAAAGAAGCCGGTTTGGATTCCTTGGTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAGCGCCAACTTTTCTGTTTAGGCCGTGCGCTGTTGAGAAGAAGTAGAATATTGGTGCTCGATGAGGCCACTGCGTCGATCGACAATGCAACGGATATGATTCTGCAGAAGACAATTCGAACTGAATTCGCAGACTGTACGGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGACTGCACCATGGTGCTTGCTATAAGTGACGGGAGAATAGCAGAATACGACGAACCGACCACGTTGATCAAGAGAGAAGGCTCTCTATTCGGACAGCTTGTGAAAGAATATTGGTCTCACTCACCATCTGCAGAATGA 4422 42.88 MEDLWGVFCGGHECSSGSEKPCGFLSDSSSCNTQALFICFDFLLLILLVSNIVGKSVKRPHMSNRIRSRSALQILSAIFNGCVGLVYLGLGIWILVEKLSKDHTALPLQLWLSATVHGFTWLLVSSVISFWCKQFPRSLLRLLSIAAFVFTGVICVLSVFDAVSNKKSSAKMILDVLSVPGSVLLLICAFGCFSRDESETSINGNGLYTPLNGEANESDKVDLVTPLAQAGLWSKFSFWWMNPLMKKGKEKTLDYDDIPMMCEEDRAGSCYLQFTNKINELKKKEPNSQPSVLRVIILCHWKDILLSGFFALLKILFLSAGPLLLNSFILVAQGHQSFKYEGLVLALSLFFSKSIESISQRQWYFRSRLVGLKVRSMLSAAIYKKQLRLSNEAKLTHSSGEIMNYVTVDAYRIGEFSYWFHQTWTTSLQLIIALLILYKAVGIATIASFLVIILCVIGNTPIAKLLHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWESHFRNVIAKLREVEHKWLSSVQIRKGYNGILFWSSPVIVSVATFGACSLLDIPLHANNVFTFVSTLRLVQDPVRSMADVIAAIIQARVSFTRIVNFLEAPELQGTSVCRKRINTNDNYSIKISSASFSWEENSSKPTLRNINLEVRSGSKVAICGEVGSGKSTLLAAILGEVPNVEGNMQVYGRLAYVSQIAWIQTGTIRDNILFGSQMDSWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNGYVMEALSSKTVLLVTHQVDFLPDFDSVLLMSDGEIQEAAPYHHLLAHSKEFQDLVHAHKETAGTERLADFSATKSLITSSKEIKKSYTEKLSVTSDANQLIKQEEREVGDSGFRPYIQYLNQSKGFIFFSLDVLSQLAFVACGIMQNSWMASNVDNPNVSNSRLILVYLLIGIISTLFLVTRSLFTALLGLESSKSLFSQLLTSLFRAPMSFYDSTPIGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTVVLAICLQRYYFASAKELMRLNGTTKSMVANHLSESVAGSMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAALCMVLLPTGSFSPGFIGMAISYGLSLNVSLVFSIQNQCTIANHIISVERLNQYMHLPSEAPEIIEERRPPTNWPSVGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPVGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHTDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAE 1473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9946556 9953369 - CmaCh18G012910.1 Cma18g01291 314629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01291 1473 SUPERFAMILY ABC transporter transmembrane region 293 598 IPR036640 GO:0005524|GO:0016021
Cma18g01291 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1229 1463 IPR003439 GO:0005524
Cma18g01291 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g01291 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 843 IPR003439 GO:0005524
Cma18g01291 1473 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 66 1473 - -
Cma18g01291 1473 CDD ABC_6TM_ABCC_D2 911 1204 IPR044726 GO:0140359
Cma18g01291 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g01291 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1456 IPR027417 -
Cma18g01291 1473 Gene3D ABC transporter type 1, transmembrane domain 273 598 IPR036640 GO:0005524|GO:0016021
Cma18g01291 1473 Gene3D ABC transporter type 1, transmembrane domain 878 1210 IPR036640 GO:0005524|GO:0016021
Cma18g01291 1473 Pfam ABC transporter 638 772 IPR003439 GO:0005524
Cma18g01291 1473 Pfam ABC transporter 1246 1394 IPR003439 GO:0005524
Cma18g01291 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 842 IPR027417 -
Cma18g01291 1473 CDD ABCC_MRP_domain1 620 820 - -
Cma18g01291 1473 SUPERFAMILY ABC transporter transmembrane region 919 1209 IPR036640 GO:0005524|GO:0016021
Cma18g01291 1473 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g01291 1473 Pfam ABC transporter transmembrane region 914 1172 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma18g01291 1473 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524
Cma18g01291 1473 CDD ABCC_MRP_domain2 1227 1447 - -
Cma18g01291 1473 CDD ABC_6TM_ABCC_D1 306 593 IPR044746 GO:0140359
Cma18g01291 1473 Gene3D - 599 863 IPR027417 -
Cma18g01291 1473 SMART AAA_5 1255 1447 IPR003593 -
Cma18g01291 1473 SMART AAA_5 647 820 IPR003593 -
Cma18g01291 1473 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 66 1473 - -
Cma18g01291 1473 Gene3D - 1212 1464 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01291 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2471.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00082 Cma18g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01291 Cma-Chr18:9946556 Cma17g01368 Cma-Chr17:9146720 0 dispersed
Cma08g00763 Cma-Chr8:4577527 Cma18g01291 Cma-Chr18:9946556 0 transposed
Cma16g00082 Cma-Chr16:358537 Cma18g01291 Cma-Chr18:9946556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01291 Cma_Chr18 FPKM 1.403009 1.287003 8.004807 7.848714 29.988899 30.43165 29.93919 0.041089 0.104466 0.0