Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01292 ATGCAAGAACTAGTGCTTGATGAGGAAGAGAAGCGTCCATCAATGGCGGCAACCATCCGGCACGTCTTCCAATTCAATTCTCCCGTGTTTCCCCCTTTCCCCTGCGAATGGGGTCGTTCAGAATATTGTAATCAGAGCTCTGTTTCGATTGGTCTCGTGGGGATTTTGAAAGCGATAATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCGTTGCTTGATTTCTTCCATAACATCCCACACTCGCCTTCTCTCAATTGGAATGAGAGTAGTTCTGTGTGCAAAGGCTGGGCAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTAGTAGCCATTCGATTACCGGCGACCGGTCTGCTCGGTCCGATTCCTGTCAATACTCTTAGCCGCCTATCTGCACTTGAGACTCTAAGCCTTAGATTAAATAGGATATCAGGGCCTTTCCCTTCTGATCTTTCCCAGCTGGAAAACTTGAGTTCCTTATATTTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTGGACTTTTCAGTTTGGAGGAACCTTAGTGTCATTGATCTATCTAACAATCTCTTTAATGGGAGCATTCCTTCTTCAATCTCAAACTTGACCCATCTGACTGTTCTGAATCTTGCAAACAACTCATTTTCGGGCGAATTTCCCGACCTTGATATTCCGAGTTTGCAATGGTTAGATTTGTCTAACAATAGTCTTATAGGAAATGTGCCTCATTCTCTTACAAGATTTCCAAGTTGGGTGTTCTCCAATAACAATATTACCGTAGAACACGGTGCAATTCCCCCGTCTTTTCCGCTCCAGCCTCCCGCTGCTCGATCGACACGGAAAGGAAAAGGACTAAGTGAATCTGCAATATTGGGTGTTGCAATTGGTGGTTTTGTTGGATTTATTTTGGTAGCAGTTTTGTTGACTGCTTGCTGGTTGAAAAGGAGAAAAGAAAATGTAAGTTCCACAATGGAGTCCAAAAAGAAGGAAACATCTGTGAACAAAAGGGGATTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTCATGGATTCTAATCTTGCATTTGATTTGGAAGACCTGTTGAGAGCGTCTGCCGAGGTTCTCGGGAAGGGAACCTTCGGAGTGAGCTACAAGGCAACGTTGGAGGACTCGACGACTGTGGTAGTGAAGAGGCTGAATCAAGTGACGGTTGGAAAACGAGAATTTGAGCAGCAGATGGAGTTGATTGGAAACATTAAGCACGAGCACATCGTTTCGCTAAGAGCATACTATTACTCGAAGGACGAGAAGCTTATGGTCTATGATTACTATGGACAAGGGAGTAAAGAAGGAAATGGTTTACCGTTATTAGATTGGGATAGTCGGATGAAAATTGCAATCGGAACGGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCACATGGAAACGTGCGAGCCTCAAACATTTTCCTAAACTCTAAAGGGTATGGCTGTGTATCTGATGTTGGTTTGTCTGTGTTGATGAATTCTATTCCGGTACCAGCCACGAGAACGGTTGGATACCGAGCCCCTGAAGTGAGCGACACTCGGAGAGCATCGGAAGCAGCGGATGTGTACAGTTTCGGGGTAGTGCTGCTGGAACTCCTGACTGGAAAGTGTCCCATACATGTTGAAGGTGGTAATGAAGTGGTTAACTTGGTGAGGTGGGTGAAGTCCGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTGAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCTGAGGAGAGGCCGAAGATGATGGATATCGTGTCGAGAATCGAGCAAGTTTGGCGAATGAGCACCGGAACGGGACCATCATCTGGATCAAGATCGGCGCATTCTACTCCAGTTCGTGTAATGGAAATCGGTTCGTCCTCATATTCACATTGA 1998 45.25 MQELVLDEEEKRPSMAATIRHVFQFNSPVFPPFPCEWGRSEYCNQSSVSIGLVGILKAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKGWAGVFCNSDESRVVAIRLPATGLLGPIPVNTLSRLSALETLSLRLNRISGPFPSDLSQLENLSSLYLQYNEFSGPLPLDFSVWRNLSVIDLSNNLFNGSIPSSISNLTHLTVLNLANNSFSGEFPDLDIPSLQWLDLSNNSLIGNVPHSLTRFPSWVFSNNNITVEHGAIPPSFPLQPPAARSTRKGKGLSESAILGVAIGGFVGFILVAVLLTACWLKRRKENVSSTMESKKKETSVNKRGFESQEQKNNLNFFMDSNLAFDLEDLLRASAEVLGKGTFGVSYKATLEDSTTVVVKRLNQVTVGKREFEQQMELIGNIKHEHIVSLRAYYYSKDEKLMVYDYYGQGSKEGNGLPLLDWDSRMKIAIGTARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLSVLMNSIPVPATRTVGYRAPEVSDTRRASEAADVYSFGVVLLELLTGKCPIHVEGGNEVVNLVRWVKSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEERPKMMDIVSRIEQVWRMSTGTGPSSGSRSAHSTPVRVMEIGSSSYSH 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9958632 9961423 + CmaCh18G012920.1 Cma18g01292 314630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01292 665 SUPERFAMILY Protein kinase-like (PK-like) 372 629 IPR011009 -
Cma18g01292 665 Pfam Leucine rich repeat N-terminal domain 70 106 IPR013210 -
Cma18g01292 665 SUPERFAMILY L domain-like 80 263 - -
Cma18g01292 665 Gene3D Ribonuclease Inhibitor 68 280 IPR032675 -
Cma18g01292 665 Pfam Protein kinase domain 371 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01292 665 ProSiteProfiles Protein kinase domain profile. 368 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01292 665 Gene3D Transferase(Phosphotransferase) domain 1 442 640 - -
Cma18g01292 665 PANTHER OS05G0588300 PROTEIN 57 656 - -
Cma18g01292 665 PANTHER LRR RECEPTOR-LIKE KINASE 57 656 - -
Cma18g01292 665 Gene3D Phosphorylase Kinase; domain 1 332 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01292 Cma-Chr18:9958632 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma15g01263 Cma-Chr15:8026674 Cma18g01292 Cma-Chr18:9958632 0 wgd
Cma16g00080 Cma-Chr16:351159 Cma18g01292 Cma-Chr18:9958632 0 wgd
Cma18g01292 Cma-Chr18:9958632 Cma02g01096 Cma-Chr2:6522935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69325 PF00069 Pkinase 1.30E-30 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01292 - - csv:101207123 1016.14