Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01293 ATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCTCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTCTTTCACCCAAATATCAACAGCAATGGAAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGTCCTGCCCTAACTATTTCCAAGGTCTTGCTTTCAATCTGTTCCCTGTTGACGGACCCAAATCCAGATGACCCGCTTGTGCCTGAGATCGCTCACATGTACAAGACTGACAGGAACAAATACGAGACGACTGCTAGGAGCTGGACGCAGAAGTATGCCATGGGCTAA 447 47.43 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9962609 9966211 + CmaCh18G012930.1 Cma18g01293 314631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01293 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Cma18g01293 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Cma18g01293 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Cma18g01293 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Cma18g01293 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Cma18g01293 148 CDD UBCc 3 142 IPR000608 -
Cma18g01293 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Cma18g01293 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Cma18g01293 148 SMART ubc_7 4 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01293 - - K06689 fve:101297588 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01293 Cma-Chr18:9962609 Cma15g01263 Cma-Chr15:8026674 1.45E-103 dispersed
Cma14g02086 Cma-Chr14:14433777 Cma18g01293 Cma-Chr18:9962609 3.32E-102 wgd
Cma16g00079 Cma-Chr16:347406 Cma18g01293 Cma-Chr18:9962609 3.35E-110 wgd
Cma18g01293 Cma-Chr18:9962609 Cma02g01098 Cma-Chr2:6533021 1.17E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251