Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01299 | ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCACTATGATCGAGGACGATATCGAACCTACCAAAGACGGTGAAGAGACCACAAGCTTGGTCTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGATGACGACGACTACGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCCATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCATTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTATGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCCGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACAATTGATCAAACCATGATTAACTCTTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA | 1056 | 44.98 | MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFTMIEDDIEPTKDGEETTSLVFSETELEASPKTKRLKMTTTTAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPMVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTATASSGCTTNMANNNNNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTIDQTMINSFTIKIGIECQLSAEELAHQIQQTFC | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10009273 | 10010998 | + | CmaCh18G012990.1 | Cma18g01299 | 314637 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01299 | 351 | MobiDBLite | consensus disorder prediction | 180 | 213 | - | - | |
Cma18g01299 | 351 | CDD | bHLH_AtFAMA_like | 99 | 172 | - | - | |
Cma18g01299 | 351 | MobiDBLite | consensus disorder prediction | 214 | 250 | - | - | |
Cma18g01299 | 351 | Coils | Coil | 140 | 160 | - | - | |
Cma18g01299 | 351 | SMART | finulus | 102 | 153 | IPR011598 | GO:0046983 | |
Cma18g01299 | 351 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 95 | 173 | IPR036638 | GO:0046983 | |
Cma18g01299 | 351 | Pfam | Helix-loop-helix DNA-binding domain | 97 | 148 | IPR011598 | GO:0046983 | |
Cma18g01299 | 351 | Gene3D | - | 89 | 161 | IPR036638 | GO:0046983 | |
Cma18g01299 | 351 | MobiDBLite | consensus disorder prediction | 168 | 250 | - | - | |
Cma18g01299 | 351 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 96 | 147 | IPR011598 | GO:0046983 | |
Cma18g01299 | 351 | PANTHER | TRANSCRIPTION FACTOR SPEECHLESS | 2 | 351 | - | - | |
Cma18g01299 | 351 | PANTHER | TRANSCRIPTION FACTOR FAMA | 2 | 351 | IPR044283 | GO:0003700|GO:0010052 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma16g00072 | Cma18g01299 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma18g01299 | Cma-Chr18:10009273 | Cma06g01432 | Cma-Chr6:9199180 | 1.07E-27 | dispersed | |
Cma16g00072 | Cma-Chr16:305173 | Cma18g01299 | Cma-Chr18:10009273 | 2.63E-174 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36841 | PF00010 | HLH | 4.30E-12 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01299 | K20558 | - | csv:101211617 | 509.99 |