Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01299 ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCACTATGATCGAGGACGATATCGAACCTACCAAAGACGGTGAAGAGACCACAAGCTTGGTCTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGATGACGACGACTACGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCCATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCATTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTATGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCCGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACAATTGATCAAACCATGATTAACTCTTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 1056 44.98 MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFTMIEDDIEPTKDGEETTSLVFSETELEASPKTKRLKMTTTTAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPMVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTATASSGCTTNMANNNNNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTIDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10009273 10010998 + CmaCh18G012990.1 Cma18g01299 314637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01299 351 MobiDBLite consensus disorder prediction 180 213 - -
Cma18g01299 351 CDD bHLH_AtFAMA_like 99 172 - -
Cma18g01299 351 MobiDBLite consensus disorder prediction 214 250 - -
Cma18g01299 351 Coils Coil 140 160 - -
Cma18g01299 351 SMART finulus 102 153 IPR011598 GO:0046983
Cma18g01299 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 173 IPR036638 GO:0046983
Cma18g01299 351 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983
Cma18g01299 351 Gene3D - 89 161 IPR036638 GO:0046983
Cma18g01299 351 MobiDBLite consensus disorder prediction 168 250 - -
Cma18g01299 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Cma18g01299 351 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 2 351 - -
Cma18g01299 351 PANTHER TRANSCRIPTION FACTOR FAMA 2 351 IPR044283 GO:0003700|GO:0010052
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00072 Cma18g01299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01299 Cma-Chr18:10009273 Cma06g01432 Cma-Chr6:9199180 1.07E-27 dispersed
Cma16g00072 Cma-Chr16:305173 Cma18g01299 Cma-Chr18:10009273 2.63E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36841 PF00010 HLH 4.30E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01299 K20558 - csv:101211617 509.99