Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01300 ATGGAGAACTTGGGGGAATGGGAGCGGAAGAATCTTCAAAATGAGCTGCTTAAAGGGAAGGAGTTTGCGAGGCAACTCCAAGTTCATCTCAATGTGAGACCTTCAACTTCATCCATGGCTGCTGCTTCTTCTTCTTCATATGACGGTGGAGAATTATTGGTTCAGAAGATTTTATCTTCATATGAGAAGGCGCTGTCATTGCTCTCTTCAACTAAATCTCCTTCCTCTCTTAACGCAAATCCAAGGAGTGAAGACTCTGACCATATTGCCCAAACAAATGCTGCTTCTCGTAAAAGGAACATTCTTCCAACTTGGACACTGAAATTCCAAGTTACTCCAGGAATGGCCCTTGAAGGCTCTCTTGATGATGGCTTTTCTTGGAGAAAATACGGTCAAAAAGGGATTTTTGGTGCCAAGCATCCCAGAGGCTATTACCGATGCACACATAGGAACCTCCAAGGTTGTGTTGCAACCAAACAAGTTCAACGTTCCGACGACGATCCGACTATCTTCAAAATCACGTATCGAGGAAACCATACTTGCAGCCAAGTGGCTAACCTTGGTACTACACCTGCAGCACCAGAGTTTCAGCAACAAAACCGTAGAATTGATCAAAATTTGGTGCAAAGCCAACAAACATCACCTGATGCTCTCTTGAACTCATGGGCATCCTTAAGAATCATAACGGAAAACCTTGACACAGTTCATGAACCAATATTGTTCCCACCGTTTAGCTACGATCCCACATCAAGTTACAAGGCTGCAGACCGCATCGAGTCAACATCAACCGATGACGTGAACATTACAGAGTTTTCGCCTATGTTTTTGTCCCCAACAAGGTGTGGTTCTGGGGTGAGATATTTCTCTGGGTCCTCAAGTGAGATGAGTGAAGGATTTATTGGGAATCAGAAGTTAGAGTTGCAGCCAAAGAAATCGGAGCTACCTGAGATATTTTCATCACCAACTTCAGGTGTAAACTCTCAAACTCTTGGCTTAGACTTCCCATCTGGTGAGCTTGAAATGGAGCCAAGTTTCACTTTTGACAACACAACTTTCTTCTCCTAA 1065 43.76 MENLGEWERKNLQNELLKGKEFARQLQVHLNVRPSTSSMAAASSSSYDGGELLVQKILSSYEKALSLLSSTKSPSSLNANPRSEDSDHIAQTNAASRKRNILPTWTLKFQVTPGMALEGSLDDGFSWRKYGQKGIFGAKHPRGYYRCTHRNLQGCVATKQVQRSDDDPTIFKITYRGNHTCSQVANLGTTPAAPEFQQQNRRIDQNLVQSQQTSPDALLNSWASLRIITENLDTVHEPILFPPFSYDPTSSYKAADRIESTSTDDVNITEFSPMFLSPTRCGSGVRYFSGSSSEMSEGFIGNQKLELQPKKSELPEIFSSPTSGVNSQTLGLDFPSGELEMEPSFTFDNTTFFS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10012040 10013307 - CmaCh18G013000.1 Cma18g01300 314638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01300 354 SUPERFAMILY WRKY DNA-binding domain 120 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01300 354 Gene3D WRKY domain 114 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01300 354 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01300 354 MobiDBLite consensus disorder prediction 72 95 - -
Cma18g01300 354 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01300 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 351 IPR044810 GO:0003700
Cma18g01300 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 351 - -
Cma18g01300 354 Pfam WRKY DNA -binding domain 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01300 - - - cpep:111809956 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00071 Cma18g01300 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01059 Cma-Chr4:5470832 Cma18g01300 Cma-Chr18:10012040 1.91E-19 dispersed
Cma06g00184 Cma-Chr6:940762 Cma18g01300 Cma-Chr18:10012040 6.37E-30 dispersed
Cma16g00553 Cma-Chr16:2839755 Cma18g01300 Cma-Chr18:10012040 4.77E-46 dispersed
Cma17g00562 Cma-Chr17:4553753 Cma18g01300 Cma-Chr18:10012040 5.50E-42 dispersed
Cma14g02098 Cma-Chr14:14511317 Cma18g01300 Cma-Chr18:10012040 9.41E-48 wgd
Cma16g00071 Cma-Chr16:303081 Cma18g01300 Cma-Chr18:10012040 1.02E-155 wgd
Cma18g01300 Cma-Chr18:10012040 Cma04g00700 Cma-Chr4:3544000 1.41E-55 wgd
Cma18g01300 Cma-Chr18:10012040 Cma06g01049 Cma-Chr6:7070890 4.74E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g867 . . Bda05g00111 . Bpe03g00242 . Bma10g01288 . Cmo16g00074 Cmo18g01329 . . . . . . Cpe14g00056 Bhi01g01452 Tan01g0147 . . Hepe07g0088 Mch10g0087 . . . . . . . . . . . . . . . . Blo07g00349 . . . . . . . . . . Cma16g00071 Cma18g01300 Car16g00062 Car18g01216 Cpe09g00042 . . . . . . . . Cla05g00948 Cam05g1039 Cec05g1044 Cco05g1038 Clacu05g1030 Cmu05g0980 Cre05g1059 . Csa03g02198 Chy06g01255 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007354 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36842 PF03106 WRKY 4.00E-26 CL0274 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01300 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.102044 0.318668 0.0 0.0 0.0 0.0