Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01303 ATGGTATGCAGCTACAATATCAGGAATGTGATTTCTTGGGCTGGACATGTAGGAATAATCAACCGAAGGGTTCAAATCAACAATATCTGGAGGAGCTTGCCTTCAAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTCGATACGGGTGCATCAGAAAATCGCAGGCCGGTTGTTGATAAGCATCCAGAGAAAAATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGTGACGATGGGAAACTTAGTTGGGGGTATTCAAGTATCAGGGGGAAGAGGGCAACCATGGAAGATTTCTTCGATATTAAAATGTCGAAGGTTGATGGTCAAACGGTTTGCCTTTTTGGGATCTTTGATGGCCATGGTGGATCTCGTGCCGCAGAGTTTTTGAAGGACCATCTCTTCGAGAATCTGATGAAGCACCCGAAGTTTTTGATGGATACCAAAGTAGCTATCAGTGAAACATATCAACGGACCGATGCTGAATTTTTAAGTTTGGAAAAAGAAACTTTAAGGGACGATGGCTCCACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAACGTTGGTGATTCGCGTGCTATAATATCAAAAGGGGGTGAAGCAATCCCTCTTTCTGAGGACCACAAACCAAATAGAACTGACGAGCGGCGGAGAATTGAAAAGGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGTGTGTTAGCAATGTCCCGCGCTTTCGGCAACAAGATGTTGAAGCAGTTTGTTGTTGCAGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACGTCGAGTTGCTTATTCTCGCAAGCGATGGTCTTTGGGATGTGGTTCGCAACGAGGATGCAGTACTAGTTGCAGGGAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAGCTAACCGAAGCAGCATTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCATGATAATGCAGGTCCTGCTGCCGAAACTCGAGAAATCGACTAA 1062 46.05 MVCSYNIRNVISWAGHVGIINRRVQINNIWRSLPSNLGFVHTWKREYRTSLMMMVDTGASENRRPVVDKHPEKNEDGGYASGGWKSDDGKLSWGYSSIRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKVAISETYQRTDAEFLSLEKETLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIEKAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDVELLILASDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAETREID 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10027315 10031046 - CmaCh18G013030.1 Cma18g01303 314641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01303 353 MobiDBLite consensus disorder prediction 62 83 - -
Cma18g01303 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Cma18g01303 353 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 46 348 - -
Cma18g01303 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Cma18g01303 353 PANTHER ALPHABET, ISOFORM E-RELATED 46 348 - -
Cma18g01303 353 SUPERFAMILY PP2C-like 90 339 IPR036457 -
Cma18g01303 353 Gene3D - 84 343 IPR036457 -
Cma18g01303 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Cma18g01303 353 CDD PP2Cc 94 338 IPR001932 -
Cma18g01303 353 SMART PP2C_4 82 336 IPR001932 -
Cma18g01303 353 MobiDBLite consensus disorder prediction 62 76 - -
Cma18g01303 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00389 Cma-Chr9:1640856 Cma18g01303 Cma-Chr18:10027315 2.14E-121 dispersed
Cma16g00066 Cma-Chr16:282142 Cma18g01303 Cma-Chr18:10027315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01303 K17506 - csv:101203681 668.307