Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01305 ATGCCTGAAGGTTTGCGCTCCGGGAAGAGAATTCTTGATCCACAAGGGCCTTTCCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGGTTGCTGTTTCATTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAGAAACAAGTGCCTTAGGTTAGATGAGAAAGTGGAGACCGTAGCCTGTATATTGCGATTGTTTACAGATTTATTCTATGTCGTGCATATCGTTTTTCAGTTTCGTACAGGATTTATCGCTCCCTCTTCCCGAGTGTTTGGAAGAGGTGTTTTAATAGAAGATTCTTGGGCAATAGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATATTCTCAGTCCTCCCACTTCCACAGGTGAGGAATGTTTCTTGGGACACAGGAGTGATGATTCTGATAAACATCCATAAAATTAGAGGTTTGAGATCGTGGAATACAGAGAACTTGCTGAAACTTGCTGTATTATGTCAATTTGTGCCGAGGTTTCTTCGAATCTATCCTCTGTATAAAGAAGTTACAAGGACCTCTGGCATACTCATTGAAACTGCTTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCCAGTCATGTATTTGGGTCAATCTGGTACTTATGTTCTGTCGAACGAGAAGCCCAATGCTGGCATGATGCTTGTAGCAAACATCCTGGCTGTAATCTTACTTCCTTGTATTGTGGCTACAATTACAGTCATGAAGGAAACCTATTTCTCAATGCTTCTTGTCCAATCGAAAAGCCAAATGTAGGAATCTTTAACTTTGGAATATTCCTTCAAGCCCTTCAATCTGATATTGGGGAATCACACTTTCCCAAGAAGTTTCTTCACTGCTTTTGGTGGGGCTTAAGGAATCTAAGCGCTTTGGGTCAAAATCTCACTACAAGTACTTGCAAATGGGAAAACTGCTTTGCCATTTTGATTTGCATCTCTGGCCTAGTGTTGTTTGCGTCTCTCCTTGGCAACCTGCAGATGTGTTGGCGATCCACAAACACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTCGAACAATGGATGTCACATCGTTTACTCCCGGAGAATATAAGGGAGCGAGTTCGAAGGTATGAACATTACATGTGGCAGGATACCAGAGGCGCTGATGAACATAATCTGCTGGATAATCTGCCTAAAGACCTCCATAGAGATATTAAGCGCCATCTTTGCTTGGTTTTGCTTATGCGAGTTCCAATGTTTGAAAAGATGGATGACCAATTGTTGGATGCAATGTGTGCACGTCTAAAGCCCGTGTTGTACACAGAAGAAAGCTGCATTGTTCGGGAAGGGGATCCAGTCGATGAGATGCTCTTCATCATGCGAGGCAAGCTCTTAACCATGACTACAAATGGAGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGTTACTGACTTGGGGTCTAGACCCTCACTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTTCGGTCACTCACAGAAGTCGAAGCATTTGCCTTTAAACCCGACGACTTGAAAATTGTAGCCGCTCAATACCGTAGGCTTCACAGCAAGCAGCTGCGCCAGATTTTCAGATTTTACTCACAGCAATGGAGAACCTGGGCAGCTTGTTTCTTACAAGCAGCATGGAGGTGGCATCAGAGAAAGAAGCTCAGGGAGTGTGTCAGGGAAGAAGAGAGTAGGTTGAAAGTTACACTGGCTTCCATCGACGAGCGGTCACCGAGTTTAGGCGCCACCATTTATGCATCTAGATTTGCAGCCAACATGCTTCGGGCGAGGAGACGAAACAGTTCTGGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTAGCTTGGAAGACAACAACTCTTAA 1944 44.14 MPEGLRSGKRILDPQGPFLQSWNKIFVLSCVVAVSLDPLFFYVPVIDNRNKCLRLDEKVETVACILRLFTDLFYVVHIVFQFRTGFIAPSSRVFGRGVLIEDSWAIAMRYLSSYFLIDIFSVLPLPQVRNVSWDTGVMILINIHKIRGLRSWNTENLLKLAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLASHVFGSIWYLCSVEREAQCWHDACSKHPGCNLTSLYCGYNYSHEGNLFLNASCPIEKPNVGIFNFGIFLQALQSDIGESHFPKKFLHCFWWGLRNLSALGQNLTTSTCKWENCFAILICISGLVLFASLLGNLQMCWRSTNTRVEEMRVRRRDVEQWMSHRLLPENIRERVRRYEHYMWQDTRGADEHNLLDNLPKDLHRDIKRHLCLVLLMRVPMFEKMDDQLLDAMCARLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWGLDPHSSTNLPISTRTVRSLTEVEAFAFKPDDLKIVAAQYRRLHSKQLRQIFRFYSQQWRTWAACFLQAAWRWHQRKKLRECVREEESRLKVTLASIDERSPSLGATIYASRFAANMLRARRRNSSGKARMSMLLQKPAEPDFSLEDNNS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10032716 10036356 + CmaCh18G013050.1 Cma18g01305 314643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01305 647 Pfam Ion transport protein 20 345 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma18g01305 647 Gene3D - 25 342 - -
Cma18g01305 647 Gene3D Jelly Rolls 419 539 IPR014710 -
Cma18g01305 647 SMART cnmp_10 421 552 IPR000595 -
Cma18g01305 647 SUPERFAMILY cAMP-binding domain-like 350 546 IPR018490 -
Cma18g01305 647 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 641 - -
Cma18g01305 647 ProSiteProfiles cAMP/cGMP binding motif profile. 421 505 IPR000595 -
Cma18g01305 647 Gene3D Helix hairpin bin 344 412 - -
Cma18g01305 647 CDD CAP_ED 421 540 IPR000595 -
Cma18g01305 647 SUPERFAMILY Voltage-gated potassium channels 13 341 - -
Cma18g01305 647 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 641 - -
Cma18g01305 647 Pfam Cyclic nucleotide-binding domain 442 535 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01305 Cma-Chr18:10032716 Cma05g01038 Cma-Chr5:8307756 0 dispersed
Cma18g01305 Cma-Chr18:10032716 Cma18g01307 Cma-Chr18:10042536 5.26E-146 proximal
Cma14g02105 Cma-Chr14:14540281 Cma18g01305 Cma-Chr18:10032716 0 wgd
Cma18g01305 Cma-Chr18:10032716 Cma02g01109 Cma-Chr2:6588999 0 wgd
Cma18g01305 Cma-Chr18:10032716 Cma06g01056 Cma-Chr6:7115695 1.01E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01305 K05391 - csv:101214911 1028.85