Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01308 ATGGAGGACGTCACAGGAAGAAGTTTTGAATGCCAGACAATTATGGATGGGAAGACGACTAATGGGAATGGCTTAGATAAGGCCATTCCGTCTTGTTGTTTGAAGGCTAAGGCTTCAGATCCTGAGCTTGAGGCTCAATGCCATTCAACTGTTGTTTCTGGCTGGATTTCAGAATTTCAGCCTGGCTCTGATAAAGCTAGCAAGTTTGTTTATTTCAACAACCCAATGTGGCCGGGAGAAGCACATTCTCTGCTAGTAGAGAATATACTATTTAAAGGAAAGTCAGAGTACCAAGAGGTCATGGTTTTTGAGTCTGCATCATATGGAAAAGTCCTTGTTCTTGATGGCATTGTTCAACTGACAGAGAAAGATGAATGTGCCTACCAGGAAATGATAGCGCATCTTCCTCTTTGTTCGATCCCGTCTCCTAAAACCGTTCTGGTTGTTGGCGGAGGTGATGGTGGAGTCCTGAGGGAAATTTCTCGTCATGACTCGGTGGAGCACATCGACATTTGTGAGATAGATGAGATGGTCATTAATGTGTCAAAACAATTTTTCCCCCAACTAGCTGTTGGATTCGAGGACCCTCGTGTTCACCTTCATGTTGGTGATGCTGTTGAATTTCTTCGGAATGCAAAGCAAGGGAAGTATGATGCCATCATTGTTGATTCCTCTGATCCTGTGGGTCCTGCCCAAGAACTGGTGGAGATGCCATTTTTTCAGACGATAGCCCGAGCATTGCGACCCGGTGGTGTTCTCTGTAACATGGCTGAAAGTATGTGGCTGCATACACATCTCATTCAGGACATGATATCAATATGTCGCCAAACATTCAAGGATGTTCACTACGCATGGACCAGTGTTCCAACATATCCAAGTGGTGTTATAGGGTTTCTACTCTGCTCAACTGAAGGGCCAACAGTTGATTTTAGGAACCCTGTGAATCCCATTGAGAAGTTAGGACATCTCAAATCAAAAAGAGAACTCAAATTCTACAACTCTGAGATGCACTTGGCTGCATTTGCGCTGCCATCGTTTCTCAAGAGCGAGGTGAAGGCACTTAGTGATGCTTCAGCTTCACTTAAAAAGGGAAGCATTTCATCCTAA 1107 44.35 MEDVTGRSFECQTIMDGKTTNGNGLDKAIPSCCLKAKASDPELEAQCHSTVVSGWISEFQPGSDKASKFVYFNNPMWPGEAHSLLVENILFKGKSEYQEVMVFESASYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVEHIDICEIDEMVINVSKQFFPQLAVGFEDPRVHLHVGDAVEFLRNAKQGKYDAIIVDSSDPVGPAQELVEMPFFQTIARALRPGGVLCNMAESMWLHTHLIQDMISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPTVDFRNPVNPIEKLGHLKSKRELKFYNSEMHLAAFALPSFLKSEVKALSDASASLKKGSISS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10046705 10049263 - CmaCh18G013080.1 Cma18g01308 314646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01308 368 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 361 IPR001045 GO:0003824
Cma18g01308 368 TIGRFAM speE: spermidine synthase 79 346 IPR001045 GO:0003824
Cma18g01308 368 Hamap Polyamine aminopropyltransferase [speE]. 54 352 IPR001045 GO:0003824
Cma18g01308 368 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Cma18g01308 368 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Cma18g01308 368 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Cma18g01308 368 Pfam Spermine/spermidine synthase domain 125 311 - -
Cma18g01308 368 PANTHER SPERMINE SYNTHASE 1 361 - -
Cma18g01308 368 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 303 IPR030374 -
Cma18g01308 368 PIRSF Spermidine_synth 42 356 IPR030668 GO:0006595
Cma18g01308 368 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Cma18g01308 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 350 IPR029063 -
Cma18g01308 368 CDD AdoMet_MTases 167 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01308 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101212743 668.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01110 Cma18g01308 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01416 Cma-Chr6:9119732 Cma18g01308 Cma-Chr18:10046705 1.80E-28 dispersed
Cma10g00133 Cma-Chr10:605951 Cma18g01308 Cma-Chr18:10046705 4.21E-118 dispersed
Cma12g00002 Cma-Chr12:6511 Cma18g01308 Cma-Chr18:10046705 3.45E-13 dispersed
Cma18g00807 Cma-Chr18:7069542 Cma18g01308 Cma-Chr18:10046705 2.17E-144 dispersed
Cma18g01308 Cma-Chr18:10046705 Cma02g01110 Cma-Chr2:6595343 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g882 . Blo15g00090 . . . Bpe07g01011 . . . Cmo18g01338 Cma02g01110 . . . Sed05g0421 Cpe05g00606 . Bhi01g01471 Tan01g0127 Cmetu09g1394 Lac11g0146 Hepe07g0078 Mch10g0078 . Cla01g00051 Cam01g0048 Cec01g0048 Cco01g0050 Clacu01g0051 Cmu01g0048 Cre09g2459 Cone1ag0965 . Cone14ag0022 Cone15ag0025 . Csa05g00058 Chy09g01431 Cme06g01114 . . Bda06g00781 . . . . Bma12g01194 . Cmo02g01138 . . Cma18g01308 . Car18g01222 Cpe09g00034 . Bhi12g00627 . . . . . Lcy12g0124 Cla05g00957 Cam05g1048 Cec05g1053 Cco05g1047 Clacu05g1041 Cmu05g0991 Cre05g1068 Lsi09g00028 . Chy06g01236 Cme09g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002366 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 2 5 5 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01308 Cma_Chr18 FPKM 4.337707 6.228076 19.349663 16.210424 3.217787 2.317443 3.648588 14.360433 15.18549 15.290261