Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01313 ATGTCGTCTACGCTACTAGAGGTGACGCGGTCTTCGCACGAGGAGGTGGAGCGACTTGAGCGGCTTGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCCGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGACACCATCGTGTCCACCACCGACAAGCTCGTTGAGATTTATGAAGATAAGGATAATGCAAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTTAGGAACCAACGTTTTTAGTGCATTTTACGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGGGTTGTTGATGTTAATGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCATGAACTCTACAACCAGTATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACTTGGATGTTTTTTCACAGCCCCAGAAAATCTCTCGCAAACTAAAGAATTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCACTTACTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGTATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCAATGGATTACCGGCACAATTGAAGGATGGGAGAACACTGTGGAAGATAATGGCCATGATCCTGCCCAGCTTAGTCTTATTGATCTTGACTATTATAGCTCGGTAGAAGAGCTGGTGGAGCTAGGTCCTGAGAGATTGAAGGAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTTGCAAAACCGTCCCGGCAACCAGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCTCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACTATCGACAGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAGCAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTCAAATGTGAGATATGCGGGAACTATAGTTATTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAGCAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAA 1527 44.2 MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKLCDLLDETIDRTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10075517 10083667 + CmaCh18G013130.1 Cma18g01313 314651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01313 508 Coils Coil 352 379 - -
Cma18g01313 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 174 IPR031774 -
Cma18g01313 508 MobiDBLite consensus disorder prediction 362 381 - -
Cma18g01313 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cma18g01313 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Cma18g01313 508 Pfam Replication stress response SDE2 C-terminal 223 303 - -
Cma18g01313 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Cma18g01313 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Cma18g01313 508 Pfam Splicing factor SF3a60 binding domain 83 105 IPR021966 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00130 Cma-Chr8:671360 Cma18g01313 Cma-Chr18:10075517 2.82E-09 dispersed
Cma17g00546 Cma-Chr17:4376310 Cma18g01313 Cma-Chr18:10075517 7.21E-09 dispersed
Cma16g00056 Cma-Chr16:243850 Cma18g01313 Cma-Chr18:10075517 5.02E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01313 K12827 - csv:101205916 917.916