Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01316 ATGGGGTGTCGCCGCCTCAATGAAACCCACCCTGCTGCCAAACCAATGAGAGGACCACTTTTCCTTCTCTCCCTCCTCTCCCTCATTCTCATTCTCATCCTCCCCGCCGCCGCCTCCCCCGCTTCACTCCTCCGACTCCGAACCCCCTCCCACCCGAACCTCCCCCGAAAACCGACCCGGGCAATTTCCAAGGCCTGTGCCCGAAGTCGCCTCCCGGCTCTCTGTGTGGACTCGCTCCTGGATTTCCCTGGATCTCTGAGCGCCAACGAACAGGATCTCGTTCACATTTCCTTCAATTTGACTCTCCACCATCTCAATCAAGCCCTCTACTCATCCTCCCACCTTTCCTCTCTTCATATGGATCTTCCCCTTCGCTCCGCCTACGACGCCTGTCTTGAACTCCTCGACGATTCCGTCCATGCCCTAACCCGCTCTTTTCACTCCCTTGCGCCGCCTTCCTCCGACAGCCGCCCAACTCCCCTCGCCTCCTCCGATGACGTCATCACCTGGCTCAGCGCCGCCCTCACCAATCAAGACACCTGTACGGACGGATTCTCCCAACTCAGCGGCAATGTTAAAGATCAAATGACCGACAAACTCCACAATTTGTCGGAGCTTGTGAGCAATTGCCTGGCGTTGTTTTCCGGTAGCGTAAGGAACGACTTTTCCGGAGTGCCGATTCAGAACAAGCGACGCTTGATGAACGCCGCCGAGAAGGAGTATGATTCTGGTAACTTCCCCGGGTGGATGAGCCGGAGAGAGAGGCGGTTGCTGACGCTGCCGGTTGGGGCGTTGCAGGCCGATATTGTGGTTTCGAAGGACGGGAATGGAACGGTAAAGACGATCGCCGAAGCGATAAAAAAGGCACCGGAATTCAGTACCAGAAAGACGATCATCTACGTGATGGCAGGAAGGTATGAAGAGAAAAACCTGAAGGTAGGGAGGAAGAAAACGAATCTGATGTTTGTTGGGGATGGGAAGGGTAAAACTGTGATTTCGGGCGGTAAGAGTATCTTTGACAACGTGACAACGTTTCACACGGCGTCGTTTGCCGTCAGCGGCGCCGGTATCATTTTGAGGGACGTGACATTTGTGAATTGGGCCGGACCGGCTCGGCACCAGGCGGTGGCCCTCCGAGTCAGCGCCGACCACGCCGTCGTGTACCGGTGCAACGTCATCGGATATCAGGACACTCTCTACGTCCATTCCAACCGCCAATTCTTTCGGGAGTGCGACATTTACGGGACGGTGGATTTCATCTTCGGCAATGCGGCAGTGGTGTTTCAAAACTGCAGCATTTACGCCCGAAAGGCGATGGAGCTTCAAAAGAACACAATCACGGCCCAGAACCGGAAGGATCCCAATCAGAACACTGGAATTTCCATCCACGCTTCCCGGATTTTGGCCACCCCCGATCTGGCGTCGCCCTCAACTACCACCAACCCAACGTATCTGGGTCGTCCCTGGAAACTGTACTCTAGAGTTGTGTACATGCAGTCATACATTGGGGGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACCTTGTATTACGGTGAGTATATGAACTATGGGCCGGGTGGGGCAGTGGGCCAGAGGGTGACCTGGCCTGGATATCGGGTCATAACGTCGAGGGTGGAGGCAAGTCAGTTCACGGTGGCGCAGTTCATTTACGGGTCGTCGTGGCTACCGTCCACTGGAGTTGCCTTCCTGGGAGGGCTAAATCTGTAA 1752 55.82 MGCRRLNETHPAAKPMRGPLFLLSLLSLILILILPAAASPASLLRLRTPSHPNLPRKPTRAISKACARSRLPALCVDSLLDFPGSLSANEQDLVHISFNLTLHHLNQALYSSSHLSSLHMDLPLRSAYDACLELLDDSVHALTRSFHSLAPPSSDSRPTPLASSDDVITWLSAALTNQDTCTDGFSQLSGNVKDQMTDKLHNLSELVSNCLALFSGSVRNDFSGVPIQNKRRLMNAAEKEYDSGNFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEFSTRKTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAVSGAGIILRDVTFVNWAGPARHQAVALRVSADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKAMELQKNTITAQNRKDPNQNTGISIHASRILATPDLASPSTTTNPTYLGRPWKLYSRVVYMQSYIGGHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSRVEASQFTVAQFIYGSSWLPSTGVAFLGGLNL 583
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 10105679 10108079 + CmaCh18G013160.1 Cma18g01316 314654
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01316 583 CDD PMEI-like_3 65 215 - -
Cma18g01316 583 Gene3D - 262 581 IPR012334 -
Cma18g01316 583 PANTHER PECTINESTERASE 16 581 - -
Cma18g01316 583 SUPERFAMILY Pectin lyase-like 264 579 IPR011050 -
Cma18g01316 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 215 IPR035513 -
Cma18g01316 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cma18g01316 583 SMART PMEI_2 57 213 IPR006501 GO:0004857
Cma18g01316 583 PANTHER PECTINESTERASE 16 581 - -
Cma18g01316 583 Pfam Plant invertase/pectin methylesterase inhibitor 61 213 IPR006501 GO:0004857
Cma18g01316 583 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Cma18g01316 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 214 IPR006501 GO:0004857
Cma18g01316 583 Pfam Pectinesterase 268 566 IPR000070 GO:0030599|GO:0042545
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma15g01025 Cma18g01316 CCT
Cma02g01117 Cma18g01316 CCT
Cma16g00050 Cma18g01316 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01067 Cma-Chr17:7630092 Cma18g01316 Cma-Chr18:10105679 4.31E-162 dispersed
Cma18g01316 Cma-Chr18:10105679 Cma17g00648 Cma-Chr17:5472057 2.17E-145 dispersed
Cma15g01025 Cma-Chr15:6364490 Cma18g01316 Cma-Chr18:10105679 0 wgd
Cma16g00050 Cma-Chr16:219206 Cma18g01316 Cma-Chr18:10105679 0 wgd
Cma18g01316 Cma-Chr18:10105679 Cma02g01117 Cma-Chr2:6634770 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01316 - - csv:101214987 919.457