Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01322 ATGGCTTTGTTGAGTCCTCGATTGCATAGATTCCGCTTATTAACCAAGCTCCACCAAGCCTCTGCCTCCAAGCCCACTAAAGCAAATCAGCTCACTGTCAGAAGAAAAACCGGATGCTGCTATGCCATAGCTGTTGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATCAGATGGGGTTCGACCACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGATGCTGTTGTGCGGTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTGTTCCTCCGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCATAACAGCTGTACAAGGTGGTCTTCTGTTGAATGGAGGGGATTTTGAAGTGATCAAAGCGGCTTTGGAGAAGGCTTTTGACGGTACTGATAAAAGATTACTCCCTTTGCTGGAGGCAGCTGGGAAGGAAGATGAATCTGGTTCCACTGCAACTGTTGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTGTTGTCACGTTCCGGAGGAGCACAGGTATTGACGAGTTCTCATCGGCCTTATGGAAACAACACCGCCTCACTGCAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATCGTTGACGGGAGAATCTGTGGAGACATCTCTGTTTCTCGTGCATTTGGTGACATACGATTCAAGACGAAGAAATACGAGATGCTGAGAAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAGTTTGTTTCTCGTGTACAGTTCAATGGCGATTTGGTAACCGCATCACCAGAAGTTCTTCAGCTTACCCTCGGATCAAATGTCGAGTTTATACTGATAGCATCAGATGGCCTATGGGATTACATGAATAGCTTCGATGCGGTTAAGTTTGTTCGGAATCAATTGAGTCAGCATGGTGATGTTCAGTTAGCTTGTGAAGCCCTCGCACAAGCAGCCTTGGACAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTGGGGCGGACAGATTGGCAGAATTTGCCCCTCCAGCAAGACAACGTCATATATGAAGTGGCTCAAGCTTTTGGTACGATTGGGGTCGTTTCTTTCGGTATTTGGTGGGCGTCCTCTATTTTCTGTCTTTAA 1167 46.27 MALLSPRLHRFRLLTKLHQASASKPTKANQLTVRRKTGCCYAIAVDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGLNGFLFAAVFDGHGGCSSVKFLREELYKDCITAVQGGLLLNGGDFEVIKAALEKAFDGTDKRLLPLLEAAGKEDESGSTATVAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNTASLQEIRRIREAGGWIVDGRICGDISVSRAFGDIRFKTKKYEMLRKGVEEGRWSEKFVSRVQFNGDLVTASPEVLQLTLGSNVEFILIASDGLWDYMNSFDAVKFVRNQLSQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLQQDNVIYEVAQAFGTIGVVSFGIWWASSIFCL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10121096 10124050 - CmaCh18G013220.1 Cma18g01322 314660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01322 388 SMART PP2C_4 48 344 IPR001932 -
Cma18g01322 388 CDD PP2Cc 57 346 IPR001932 -
Cma18g01322 388 ProSiteProfiles PPM-type phosphatase domain profile. 58 346 IPR001932 -
Cma18g01322 388 SUPERFAMILY PP2C-like 56 347 IPR036457 -
Cma18g01322 388 Gene3D - 57 352 IPR036457 -
Cma18g01322 388 PANTHER PROTEIN PHOSPHATASE 2C 6 383 IPR015655 GO:0004722|GO:0006470
Cma18g01322 388 Pfam Protein phosphatase 2C 60 339 IPR001932 -
Cma18g01322 388 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Cma18g01322 388 PANTHER PROTEIN PHOSPHATASE 2C 57 6 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01322 Cma-Chr18:10121096 Cma04g02414 Cma-Chr4:16659574 3.31E-32 dispersed
Cma16g00037 Cma-Chr16:166272 Cma18g01322 Cma-Chr18:10121096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01322 K04457 - csv:101218076 667.922