Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01323 ATGGCTTGTATTCAATATGGTAAAAATGCACTCCAGAGAATTATTAAAGACACTAGGCTTCATCCTTCTGATCGAATGATGCAGCCATTGCTGTTCTCGAGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTGACAACAGTGAAAAAGCTTGGGAAGGCCGGTGAGACAGTTAAGGTAGCCCCGGGATACTTTCGAAACCATCTTATGCCCAAGTTGCTGGCTGTTCCAAATATTGACAAGTATGCTTATCTCATCAAGGAGCAGCGCAGGATTTACCAACCAGTTGAGGAAGAGGTCGTTAAGGTTGTGACAGTGACGAAGGAGGATAAGATGAAAGAATATGAGAAGGCAGCAAAACGCCTGGATAGTACTCAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAGTTCCGTACTCGTGCCACAAAAGATGAGCCCTTGGCCTTGCAATCTTCTGTGACGGTAGACGACCTTGTTGCTGAGGTGGCACGGCAACTTTCTATTCAAATTACGCCTGAAAATCTACATTTGCCAGCCCCCTTACCAACATGTGGTGAATATGAAGTACCACTGCGCTTTCCAAAGTCGATCCCATTGCCTGAAGGAAAGATCTACTGGACCCTGAAAGTTAAATCTAGATCTAAGAGAAACTACTATTATGACCACCAAGACTATGATTCCGAGGCGATGGGCAGAACCAGACCTCGTTACAACAATCACTACTCCAGTAATAACTATCGTCACCGTGGCAGTGCAATTCGACCGTCTAAACCTCAAGACCAGCCTCTTATGGTGACCACAACTTACAGGATACTCTGTCATGACGCCAAAGCCGGGGGTGTCATCGGAAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGTGCGTGGATCAACGTGCATGAGCTTGTTCCGGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGACGGGACCCCGAAGGTCGGATGTCGTCGTTCTCTCCCGCGCAGGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTGCTGAGGATGAGGAGGATGATTACGGCGAGGTTAGAGGAGGAGCTGGTGGTGGCAGTAGCCGTGTGGCCACAAGGCTTGTGGTGTCTAGAATGCACGTAGGTTGTTTGCTAGGGAAGGGAGGAAAGATAATCGAGCAAATGAGAATGGAAACCAAGACTCAGATAAGGGTTCTACCTAGAGATCACAATTTGCCTAGCTGCATTACAATGTCAGAGGAGATCGTTCAGATTGTTGGAGATGCAAATGGTGTAAAGAAAGCTACAGCTATCATTTCATCACGCTTGAGAGAGAGCCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGAATGTTCCCTCCTGATGATGATTATGTTCCACATACAGCACGGCGATTATCAATGGATGGACGACCATTTAGGCCACGTATATCTGCTTCTAATACAAGAAGCAATGACTATTTGAACCGTCATTCTAATTTTTCGGTGGAGTATGGGGCTACTCCTGTTAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGATAAGGTTGATAGTGTCATTGGAGAGTCTGATGGAATCATAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAAGGTTTCAAGCCCTATGACTGGTTCAAACGAACAAATTCTTATCATTTCCTCGGACGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGACAAGGATAACATTGTAACTACTAGGTTACTTGTCCATTCAAGTGATATTGGATGTTTGGAAGGAAGGGATGGATCGTTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAACTTCCCATGTTTGTATCTGGGGCTGATGAGCTTGTACAGATCATAGGGGACATTCAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAGTTATATTTGTAAGGAGCCCTACCAAAAAGATGCAAGTCCCCCGATCTCAGTACCGAGCACCATGGTCAGTTTAGGACTTGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCACAGTGGAAATGATTCTTTTAGCACGGCCTATCAAAATGTGCAACCTTTTGTAACAGCACAGCTTCTGAAGGAAACTGGAGGGTCGAGCAATGAGACTGGTACGCAGAATGAAAATGACCGACGTGAAGATTTGCCTAGTGGGTTAAATAGGATCCCTGTGCCACTTGTCACTCGGAGCACACTTGAAGTTGTGATACCAGAGCCTGCAGTTCCCCAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGTTATCCGGAGCCAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAAGCTGAAAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCAGCTCGGAAGGTGTCTCATTTCCAGCTGAGCGATTGAGCGAATTAACCATTGCCATGTAA 2664 44.89 MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTVKKLGKAGETVKVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHLPAPLPTCGEYEVPLRFPKSIPLPEGKIYWTLKVKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYSSNNYRHRGSAIRPSKPQDQPLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMSSFSPAQEALFLIHERILESEMSPGFNGMGYGAEDEEDDYGEVRGGAGGGSSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPSCITMSEEIVQIVGDANGVKKATAIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTARRLSMDGRPFRPRISASNTRSNDYLNRHSNFSVEYGATPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESDGIIELLRNEVGVDIKVSSPMTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVHSSDIGCLEGRDGSLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIQAARDALVELTSRLRSYICKEPYQKDASPPISVPSTMVSLGLEESSSNNNAAAREVHSGNDSFSTAYQNVQPFVTAQLLKETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPQLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSSEGVSFPAERLSELTIAM 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10125793 10134765 - CmaCh18G013230.1 Cma18g01323 314661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01323 887 Gene3D - 540 701 - -
Cma18g01323 887 Gene3D K Homology domain, type 1 797 868 IPR036612 GO:0003723
Cma18g01323 887 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 790 868 IPR036612 GO:0003723
Cma18g01323 887 Gene3D K Homology domain, type 1 267 350 IPR036612 GO:0003723
Cma18g01323 887 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 534 594 IPR036612 GO:0003723
Cma18g01323 887 SUPERFAMILY Ribosomal protein L9 C-domain 111 199 IPR036791 -
Cma18g01323 887 CDD KH-I 800 863 - -
Cma18g01323 887 ProSiteProfiles Type-1 KH domain profile. 268 340 - -
Cma18g01323 887 SUPERFAMILY L9 N-domain-like 44 93 IPR009027 -
Cma18g01323 887 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 380 464 IPR036612 GO:0003723
Cma18g01323 887 MobiDBLite consensus disorder prediction 765 790 - -
Cma18g01323 887 Pfam KH domain 386 454 IPR004088 GO:0003723
Cma18g01323 887 Pfam KH domain 270 319 IPR004088 GO:0003723
Cma18g01323 887 Pfam KH domain 800 863 IPR004088 GO:0003723
Cma18g01323 887 SMART kh_6 540 613 IPR004087 GO:0003676
Cma18g01323 887 SMART kh_6 267 348 IPR004087 GO:0003676
Cma18g01323 887 SMART kh_6 624 698 IPR004087 GO:0003676
Cma18g01323 887 SMART kh_6 797 867 IPR004087 GO:0003676
Cma18g01323 887 SMART kh_6 382 458 IPR004087 GO:0003676
Cma18g01323 887 Pfam Ribosomal protein L9, N-terminal domain 44 78 IPR020070 -
Cma18g01323 887 Gene3D K Homology domain, type 1 380 462 IPR036612 GO:0003723
Cma18g01323 887 MobiDBLite consensus disorder prediction 232 262 - -
Cma18g01323 887 MobiDBLite consensus disorder prediction 238 252 - -
Cma18g01323 887 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 618 706 IPR036612 GO:0003723
Cma18g01323 887 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 264 321 IPR036612 GO:0003723
Cma18g01323 887 CDD PCBP_like_KH 387 454 - -
Cma18g01323 887 ProSiteProfiles Type-1 KH domain profile. 383 453 - -
Cma18g01323 887 ProSiteProfiles Type-1 KH domain profile. 541 608 - -
Cma18g01323 887 CDD PCBP_like_KH 270 344 - -
Cma18g01323 887 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 213 780 - -
Cma18g01323 887 Gene3D - 43 91 IPR036935 -
Cma18g01323 887 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 213 780 - -
Cma18g01323 887 ProSiteProfiles Type-1 KH domain profile. 798 862 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01323 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1125.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00038 Cma18g01323 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01323 Cma-Chr18:10125793 Cma19g00482 Cma-Chr19:5763124 7.88E-62 dispersed
Cma16g00038 Cma-Chr16:169751 Cma18g01323 Cma-Chr18:10125793 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01323 Cma_Chr18 FPKM 14.803185 18.206869 15.26539 16.765781 24.200989 26.170275 23.334955 18.474728 20.085142 20.524113