Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01332 ATGGCCGCCGCCGCTCTCAGGTCCAGGTCCAGGTCCTCCAAGGAAGTTGCCAGTTTAACTCTTTCTCGTTGTAGACACTGTGTTTCCAATTATATTCACTCTGCTAGCAATCCCATTTCCCACTGCACGAGTCGTAACAAATCGAATGACCTCTATCTCAGCTCGCCTTTCCACTTGGTCTCTTTCAAGTCGGTTTCACTTAGAGGCGACTTTCTCCACAACGGGACTCAATCTTCCGATCATCGGATGGCTTATCCGAATTCCAACAAGAACCTGAATGAGAGGTTGAGCAGGGGCGGTTGTTTTATGAGCACTTATGGGGACCCGCCTGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGTGGAGGTGGCGGTGGTGGAAGCGCCAACTCTGGTTCTGGTGGTGGTGGCTTTGGCGCGAACTCGAATGATGGGTGTTGGGGTGGTTCCAGTTTGGGTCCTAATTTTCCAACCCCGAAGGAAATCTCCAAGGGGCTTGATAAGTTTGTAATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCGTTGCAAAGGCCTACAGGAGATACGGTTACCAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTTCTCGCCAAAACCTTGGCACGATTTGTTAATGTTCCATTTGTTATTGCAGATGCAACTACACTAACACAGGCGGGATATGTTGGAGAAGACGTGGAGTCTATATTGTACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATAGACGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTAAACGTGCCTGAGAAAGGTGCAAGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATCGACTTAGAAAAAACGATCTCAGAAAGGCGACAAGATTCTTCTCTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAAGTGGTGTTACAGATGCCATTGTTGAAAGTAGTGACCTCATTGCATATGGGTTAATACCCGAATTTGTTGGTCGATTCCCCATCCTCGTCAGTTTGTCAGCCCTAACAGAAGACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCGCTAGGAAAGCAGTATAGAAAGATGTTCCAGATGAATGACGTCAAGCTCCACTTCACAGAAAATGCCTTGAGATTAATTGCAAGAAAGGCAATGTCTAAGAACACTGGAGCACGGGGTTTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTACGAGATTCCTGATGTCAGAACAGGTGAGGATATAATCGATGCTGTTATCATTGATGAAGAATCCATTGGGTCAGACAGCACGGGTTGTGGCGCTAAAATTCTTTACGGAAAGGGAGCATTGGATCGCTATCTTTCAGGACAAAAGACTACAAGTCAGGGTTCCGAAGAAGAGGCAGAACCTGAAAGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCAGCATACACCTGGGGAATACAGGAACAATCCCAGGGGGTAGAGACGACCAAGAAAGGAACCTCGATCTTTCGGATAGTATCGAGTGTGTATCATCTTCCGATGGTTTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATTCTTATTCCCATTCTCATCATCATCCCGAGTTGTCAGCAACCAAGCCTCGCAATGGAAACAATAATAGCGCTGTAGCAGGCCCCACTGCCACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGACATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAGATATTATTCCTTGGGATGCCCTGAAATATTTCCTTACTACAGTAAACTCAAGCACGAAGCATTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTTCCCATCTGAGGGATGATCACAAGGTGGACATGCACACCGGATGCACATTTAACCATCGCTATGTGAAATCTAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACGGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTGTATATGGCTTTCCTTCGTTTCATGGGCGACGAGAATGAGGCGCGAACCTACAGCTACAGTCTGGAGGTGGGTGGATATGGGCGAAAACTGATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGCCATCGAAAAGTGAGGGATAGCCATGATGGGCTGATGATTCAAAGAAATATGGCTCTGTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGGGTCTGCATACCCAACCTTATCGAGTGTGTCTCGTCGTCCGATGGTCTCGATGAGGATGACATCCATTTGCACCACACTCTTCATCCTTATTCCCACTCTCATCATCACCCCGAGTTGTCAGCATCGAAGCCTCGTAATGGTAACAACAACAGCGCTGTGAACGCTCCCACTGCCACTGCGCCGTCGACTAGCGTCCATGAATTGCTCGAATGCCCTGTCTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTGTGTTATACTTGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCCCTGGGATGCCCTGAGATATTTCCGTACTATAGTAAACTTAAGCATGAGGCTTTATGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGTTCGGAATGCTCTGCTGTTGGGGATATTCCCTTTCTTGTCGCCCATCTGAGGGACGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTCGGTCAATGTTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGAGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAAGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTCGAGATAGTCATCAAAAAGTCAGGGACAGCCACGATGGATTAATTATTCAAAGAAATATGGCTCTTTTCTTCTCAGGCGGGGATAGAAAGGAACTGAAGCTAAGAGTTACAGGATATGGAAGGAACAAAACCCAGATGCTGGAGCCTGCATACCGAACCTTTGTAGCTAAAAGTGAAATGCTGCACAATGCCTGCCTCTTC 3771 46.86 MAAAALRSRSRSSKEVASLTLSRCRHCVSNYIHSASNPISHCTSRNKSNDLYLSSPFHLVSFKSVSLRGDFLHNGTQSSDHRMAYPNSNKNLNERLSRGGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGGSANSGSGGGGFGANSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVTNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRASGVTDAIVESSDLIAYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDVRTGEDIIDAVIIDEESIGSDSTGCGAKILYGKGALDRYLSGQKTTSQGSEEEAEPESETDLPSVVASSIHLGNTGTIPGGRDDQERNLDLSDSIECVSSSDGFDEDEIHLHHTLHSYSHSHHHPELSATKPRNGNNNSAVAGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCRYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLMIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLIECVSSSDGLDEDDIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNAPTATAPSTSVHELLECPVCTNSMYPPIHQCHNGHTLCYTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQCFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHQKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGYGRNKTQMLEPAYRTFVAKSEMLHNACLF 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10151205 10166859 + CmaCh18G013320.1 Cma18g01332 314670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01332 1257 CDD Sina 776 904 - -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 633 648 - -
Cma18g01332 1257 CDD AAA 229 340 - -
Cma18g01332 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1039 1094 IPR013083 -
Cma18g01332 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 770 IPR013083 -
Cma18g01332 1257 ProSiteProfiles Zinc finger RING-type profile. 986 1022 IPR001841 -
Cma18g01332 1257 SUPERFAMILY TRAF domain-like 715 907 - -
Cma18g01332 1257 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 771 903 IPR008974 GO:0005515
Cma18g01332 1257 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1097 1227 IPR008974 GO:0005515
Cma18g01332 1257 Pfam Seven in absentia protein family 1028 1227 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma18g01332 1257 Pfam Seven in absentia protein family 704 903 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma18g01332 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1038 IPR013083 -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 545 566 - -
Cma18g01332 1257 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 164 521 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cma18g01332 1257 SUPERFAMILY TRAF domain-like 1039 1227 - -
Cma18g01332 1257 SMART ClpB_D2_small_2 431 521 IPR019489 -
Cma18g01332 1257 SUPERFAMILY RING/U-box 650 701 - -
Cma18g01332 1257 Gene3D - 430 530 - -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 943 976 - -
Cma18g01332 1257 Gene3D - 161 429 IPR027417 -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 619 648 - -
Cma18g01332 1257 ProSiteProfiles Zinc finger RING-type profile. 662 698 IPR001841 -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 124 144 - -
Cma18g01332 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 921 1235 - -
Cma18g01332 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 596 914 - -
Cma18g01332 1257 Pfam C-terminal, D2-small domain, of ClpB protein 431 501 IPR019489 -
Cma18g01332 1257 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 921 1235 - -
Cma18g01332 1257 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 596 914 - -
Cma18g01332 1257 ProSiteProfiles Zinc finger SIAH-type profile. 1039 1099 IPR013010 GO:0008270
Cma18g01332 1257 SMART AAA_5 228 390 IPR003593 -
Cma18g01332 1257 CDD RING-HC_SIAHs 984 1022 - -
Cma18g01332 1257 SUPERFAMILY RING/U-box 980 1026 - -
Cma18g01332 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 516 IPR027417 -
Cma18g01332 1257 ProSiteProfiles Zinc finger SIAH-type profile. 715 775 IPR013010 GO:0008270
Cma18g01332 1257 CDD Sina 1100 1228 - -
Cma18g01332 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 714 IPR013083 -
Cma18g01332 1257 MobiDBLite consensus disorder prediction 957 976 - -
Cma18g01332 1257 CDD RING-HC_SIAHs 660 698 - -
Cma18g01332 1257 Pfam AAA domain (Cdc48 subfamily) 228 424 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00101 Cma-Chr3:1054954 Cma18g01332 Cma-Chr18:10151205 1.45E-146 dispersed
Cma04g01896 Cma-Chr4:9892183 Cma18g01332 Cma-Chr18:10151205 0 dispersed
Cma07g01290 Cma-Chr7:7273739 Cma18g01332 Cma-Chr18:10151205 1.09E-148 dispersed
Cma08g00110 Cma-Chr8:583263 Cma18g01332 Cma-Chr18:10151205 3.21E-154 dispersed
Cma09g01207 Cma-Chr9:7957753 Cma18g01332 Cma-Chr18:10151205 0 dispersed
Cma15g00822 Cma-Chr15:4132604 Cma18g01332 Cma-Chr18:10151205 1.98E-145 dispersed
Cma17g00559 Cma-Chr17:4545506 Cma18g01332 Cma-Chr18:10151205 9.58E-163 dispersed
Cma18g00866 Cma-Chr18:7539215 Cma18g01332 Cma-Chr18:10151205 1.46E-150 dispersed
Cma16g00047 Cma-Chr16:199743 Cma18g01332 Cma-Chr18:10151205 3.33E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01332 K03544 - csv:101215939 927.932