Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01338 ATGGAGAGACAGGAGTACATCAAAATACAAAATTTTGAAGTAACCCCTTCGCAGACATGTCCAACTCCTAGGAGGAGGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAGTCAGCCGAGTTGGACTCCAACCTCGCCAGATTTCTATCTGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGACTCAGAGCTAGTTATAATAATCTAGCTTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGTGAGCTTGTTCAAGAAGAACCTGGTGAGGGATGTTATTCGAATGATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCAAGAAATCTTAGAAGATGAACCGGAACAGAATAGAATCACTTATTGA 450 40.22 MERQEYIKIQNFEVTPSQTCPTPRRRKKKKKKSNNMNKRRFSDEQVSRVGLQPRQISIWFQNRRARWKSKQMENDFRRLRASYNNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSNDFGKNADENQAKQEILEDEPEQNRITY 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10196929 10197525 - CmaCh18G013380.1 Cma18g01338 314676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01338 149 Pfam Homeodomain 48 68 IPR001356 GO:0003677
Cma18g01338 149 ProSiteProfiles 'Homeobox' domain profile. 48 70 IPR001356 GO:0003677
Cma18g01338 149 Pfam Homeobox associated leucine zipper 70 112 IPR003106 GO:0006355|GO:0043565
Cma18g01338 149 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 141 IPR045224 GO:0003700
Cma18g01338 149 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 49 141 - -
Cma18g01338 149 CDD homeodomain 48 71 IPR001356 GO:0003677
Cma18g01338 149 MobiDBLite consensus disorder prediction 129 149 - -
Cma18g01338 149 MobiDBLite consensus disorder prediction 12 49 - -
Cma18g01338 149 Coils Coil 69 110 - -
Cma18g01338 149 MobiDBLite consensus disorder prediction 115 149 - -
Cma18g01338 149 MobiDBLite consensus disorder prediction 22 36 - -
Cma18g01338 149 Gene3D - 34 77 - -
Cma18g01338 149 SUPERFAMILY Homeodomain-like 47 79 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01338 K09338 HD-ZIP; homeobox-leucine zipper protein - zju:107423690 110.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00024 Cma18g01338 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01338 Cma-Chr18:10196929 Cma07g00559 Cma-Chr7:2415764 1.05E-20 dispersed
Cma14g02132 Cma-Chr14:14631045 Cma18g01338 Cma-Chr18:10196929 4.81E-24 wgd
Cma16g00024 Cma-Chr16:121192 Cma18g01338 Cma-Chr18:10196929 3.12E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36846 PF02183 HALZ 3.30E-13 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01338 Cma_Chr18 FPKM 0.804444 0.0 0.0 0.0 0.0 0.482324 0.0 0.0 0.870999 0.45801