Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01342 ATGGGGTCCTCGGGGAAAGGTTGTGAGGTCCAGATCACCCCCACCACCCGAGTGAGCGATGAAGAAGCACAGCTGTTCGCCATGCAGTTGGCGAGCGCCTCGGTTCTTCCAATGGTGCTGAAGGCCGCCATCGAGCTAGACGTGCTGGAGATCATTGGGGCGGCAGGGGAGGGGGCTTTGTTGTCCCCCTCACAAATTGCCTCTCACCTCTCCTTCTCTGGGGCCAAAACCCCAAACCCTGAGGCGGGTGTGGTTCTAGACCGCATGCTCCGGTTGCTGGCCTCCTACTCCATCCTCACTTACTCCCTCAATACTCTCCCCGATGGCTCACTCCAGAGGCTCTACGGCCTCGCCCCTGTAGCCAAGTTCTTGGTCAAGAATCAAGACGGCGTCTCCATCGCTCCCCTGTGTCTCATGAACCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCGGTACTGGAAGGAGGAATTCCATTCAACAAAGCATACGGAATGACGGCGTTCGAATATCATGGAACAGATCCGAGATTCAACAGGGTGTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTAGAGACCTACAAAGGCTTCGAAGGCCTTAATTCAGTGGTGGATGTGGGCGGTGGGACCGGAGCTGTTCTCAACATGATAGTCTCCAAGTACCCTTCTATTAGGGGCATCAACTTCGACCTCCCTCATGTCATTCAGGACGCCCCTGCCTACCCAGGCGTCCAACATGTTGGGGGAGACATGTTTGTGAGCGTGCCAAAGGGGGATGCTATTTTCATGAAGTGGATCTGTCACGATTGGAGCGACCAGCACTGCCTGAAATTGTTGAAGAATTGCCACGATTCTCTGCCGGAGCATGGGAAGGTGATCGTGGCAGAATGCATTCTTCCGGTTGCACCAGACAGCAGCCTTGCCACCAAGGGAGTGATTCACATCGATGTCATAATGCTGGCTCACAACCCTGGAGGCAAAGAAAGGACCGAGCAGGAGTTCCACGCCTTGGCCAAGGCTGCTGGATTTCAAGGCTTCAAGGTCCACTCTTGTGCTTTCAACACATACATCATGGAATTTCTCAAGACTCTTTAG 1125 53.69 MGSSGKGCEVQITPTTRVSDEEAQLFAMQLASASVLPMVLKAAIELDVLEIIGAAGEGALLSPSQIASHLSFSGAKTPNPEAGVVLDRMLRLLASYSILTYSLNTLPDGSLQRLYGLAPVAKFLVKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNRVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPAYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDQHCLKLLKNCHDSLPEHGKVIVAECILPVAPDSSLATKGVIHIDVIMLAHNPGGKERTEQEFHALAKAAGFQGFKVHSCAFNTYIMEFLKTL 374
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 10209866 10212157 - CmaCh18G013420.1 Cma18g01342 314680
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01342 374 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Cma18g01342 374 Pfam Dimerisation domain 38 94 IPR012967 GO:0046983
Cma18g01342 374 CDD AdoMet_MTases 213 304 - -
Cma18g01342 374 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Cma18g01342 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
Cma18g01342 374 PANTHER BNAA10G07270D PROTEIN 6 372 - -
Cma18g01342 374 Gene3D - 7 124 IPR036388 -
Cma18g01342 374 PIRSF O-mtase 7 372 IPR016461 GO:0008168
Cma18g01342 374 SUPERFAMILY Winged helix DNA-binding domain 19 127 IPR036390 -
Cma18g01342 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 372 IPR016461 GO:0008168
Cma18g01342 374 PANTHER O-METHYLTRANSFERASE 6 372 IPR016461 GO:0008168
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00415 Cma-Chr6:1924548 Cma18g01342 Cma-Chr18:10209866 9.13E-80 dispersed
Cma06g00681 Cma-Chr6:3403727 Cma18g01342 Cma-Chr18:10209866 1.33E-12 dispersed
Cma06g00682 Cma-Chr6:3407424 Cma18g01342 Cma-Chr18:10209866 4.64E-142 dispersed
Cma06g00683 Cma-Chr6:3410624 Cma18g01342 Cma-Chr18:10209866 1.27E-13 dispersed
Cma18g01342 Cma-Chr18:10209866 Cma19g00763 Cma-Chr19:7554904 4.81E-62 dispersed
Cma18g01342 Cma-Chr18:10209866 Cma11g01356 Cma-Chr11:8975412 7.86E-68 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01342 K13066 - csv:101204109 639.417