Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g01342 | ATGGGGTCCTCGGGGAAAGGTTGTGAGGTCCAGATCACCCCCACCACCCGAGTGAGCGATGAAGAAGCACAGCTGTTCGCCATGCAGTTGGCGAGCGCCTCGGTTCTTCCAATGGTGCTGAAGGCCGCCATCGAGCTAGACGTGCTGGAGATCATTGGGGCGGCAGGGGAGGGGGCTTTGTTGTCCCCCTCACAAATTGCCTCTCACCTCTCCTTCTCTGGGGCCAAAACCCCAAACCCTGAGGCGGGTGTGGTTCTAGACCGCATGCTCCGGTTGCTGGCCTCCTACTCCATCCTCACTTACTCCCTCAATACTCTCCCCGATGGCTCACTCCAGAGGCTCTACGGCCTCGCCCCTGTAGCCAAGTTCTTGGTCAAGAATCAAGACGGCGTCTCCATCGCTCCCCTGTGTCTCATGAACCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCGGTACTGGAAGGAGGAATTCCATTCAACAAAGCATACGGAATGACGGCGTTCGAATATCATGGAACAGATCCGAGATTCAACAGGGTGTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTAGAGACCTACAAAGGCTTCGAAGGCCTTAATTCAGTGGTGGATGTGGGCGGTGGGACCGGAGCTGTTCTCAACATGATAGTCTCCAAGTACCCTTCTATTAGGGGCATCAACTTCGACCTCCCTCATGTCATTCAGGACGCCCCTGCCTACCCAGGCGTCCAACATGTTGGGGGAGACATGTTTGTGAGCGTGCCAAAGGGGGATGCTATTTTCATGAAGTGGATCTGTCACGATTGGAGCGACCAGCACTGCCTGAAATTGTTGAAGAATTGCCACGATTCTCTGCCGGAGCATGGGAAGGTGATCGTGGCAGAATGCATTCTTCCGGTTGCACCAGACAGCAGCCTTGCCACCAAGGGAGTGATTCACATCGATGTCATAATGCTGGCTCACAACCCTGGAGGCAAAGAAAGGACCGAGCAGGAGTTCCACGCCTTGGCCAAGGCTGCTGGATTTCAAGGCTTCAAGGTCCACTCTTGTGCTTTCAACACATACATCATGGAATTTCTCAAGACTCTTTAG | 1125 | 53.69 | MGSSGKGCEVQITPTTRVSDEEAQLFAMQLASASVLPMVLKAAIELDVLEIIGAAGEGALLSPSQIASHLSFSGAKTPNPEAGVVLDRMLRLLASYSILTYSLNTLPDGSLQRLYGLAPVAKFLVKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNRVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPAYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDQHCLKLLKNCHDSLPEHGKVIVAECILPVAPDSSLATKGVIHIDVIMLAHNPGGKERTEQEFHALAKAAGFQGFKVHSCAFNTYIMEFLKTL | 374 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 10209866 | 10212157 | - | CmaCh18G013420.1 | Cma18g01342 | 314680 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g01342 | 374 | Gene3D | Vaccinia Virus protein VP39 | 125 | 372 | IPR029063 | - | |
| Cma18g01342 | 374 | Pfam | Dimerisation domain | 38 | 94 | IPR012967 | GO:0046983 | |
| Cma18g01342 | 374 | CDD | AdoMet_MTases | 213 | 304 | - | - | |
| Cma18g01342 | 374 | Pfam | O-methyltransferase domain | 149 | 354 | IPR001077 | GO:0008171 | |
| Cma18g01342 | 374 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 129 | 370 | IPR029063 | - | |
| Cma18g01342 | 374 | PANTHER | BNAA10G07270D PROTEIN | 6 | 372 | - | - | |
| Cma18g01342 | 374 | Gene3D | - | 7 | 124 | IPR036388 | - | |
| Cma18g01342 | 374 | PIRSF | O-mtase | 7 | 372 | IPR016461 | GO:0008168 | |
| Cma18g01342 | 374 | SUPERFAMILY | Winged helix DNA-binding domain | 19 | 127 | IPR036390 | - | |
| Cma18g01342 | 374 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 28 | 372 | IPR016461 | GO:0008168 | |
| Cma18g01342 | 374 | PANTHER | O-METHYLTRANSFERASE | 6 | 372 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00415 | Cma-Chr6:1924548 | Cma18g01342 | Cma-Chr18:10209866 | 9.13E-80 | dispersed | |
| Cma06g00681 | Cma-Chr6:3403727 | Cma18g01342 | Cma-Chr18:10209866 | 1.33E-12 | dispersed | |
| Cma06g00682 | Cma-Chr6:3407424 | Cma18g01342 | Cma-Chr18:10209866 | 4.64E-142 | dispersed | |
| Cma06g00683 | Cma-Chr6:3410624 | Cma18g01342 | Cma-Chr18:10209866 | 1.27E-13 | dispersed | |
| Cma18g01342 | Cma-Chr18:10209866 | Cma19g00763 | Cma-Chr19:7554904 | 4.81E-62 | dispersed | |
| Cma18g01342 | Cma-Chr18:10209866 | Cma11g01356 | Cma-Chr11:8975412 | 7.86E-68 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g01342 | K13066 | - | csv:101204109 | 639.417 |