Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01344 ATGGGTTTTGCCCCTTTTGGTGTTGGTAATGGAGGATCTTCATCATCTTTCTCCAATTTATCACCTTTGGCGCCGCCCTTTACTCTTGATCGTTCGGTTACTAAACCTTTATCAACCCCACTTGTGGATATCACTGAACCTGAACCTGAATTTGGGGTTGGGGGTGGGGTTCCCCTCAACCCTTTGCAACACAATTGGCTCCCTTCCACCTCCAAAACCTCAGCCCATGACTTCTTCTCCTCTGAATTTGATTGGTTGCCCTTCTCTACTGGCTCTGGATTCCCCAGGTCGCAGGCTATGATGGACCCTTCTCATAACCATGGACCTCTTTTGGGTCGTCTTACAATCACTTCAACTGACCTCTCCTCATACCACGGATCCTCTGATGGAGTAACAACTAGTATGGGCAAACCAAAACCCTATTATCCTTCTTATGCCGCAACTTCATCTAACAAAGCTGGTCCTACGGTCATTGTTGATCAACCAAGTTATGATTGGCTATCAAACTCGCACGTTGTTACATTCGAAGGGCCCCCGTGCACCGACTTCTCTCGCGGATCTTCAGCTTCTGAGAGATCAACTGAAGAGGCTTCACATTCTGTTGATGTGCTTGATCTTAATAAATGCAACGAATTTGTAAGAGAATATCCAAATGAGGAATTGTTTTCGGAGCGAAACCTTAACATTGAGAGAATTTCTAACATGGATGCTCATTCTGCATTTCCAGGATGTCATCCTAAGACTAGGACACCACCTTCCAATCCAGCCTCAAGTTCTCAAAACTCTCCATTTCTGAAAAAGCCTCCATATCTGGAAATCTCGAGAGAGCAAGATTCTAGACTGAACGTGACTGCATCAATTGTCAATTCTCCCGCTACTTTTTCCATCAGACCATCTGTTGTCAGCACTGATTCTTTTGCCTGGAATGTCGGCTCATGTCATGTTTCAGATTATGGCTATGATTCCTTTGAAGCAAAACAAGGTGGTAACAACCTTTCAAATCTAAAGGAGCTTCTTCCAGTTAACTCTGAGAGCAAGGAATTCGTCAGTGCAGAGAATTATGATACATGTATAGATAAAAACGATCCCGTAATTACTGAACCCTCATCAACCAAAATTCATGACTTGCGAAACAATATACATTCTGCTAAGGATTCGCCAGATCGTAGATTGAAGGCTGGAATGAGACTTCATATTCCCGATGCCAGTCCTCATTTTAGTTTGGACCCTAAAGGAATTGAAACTGCCACAACAACTGAGAGTTCCTCTGAAAGTTTTGATCAATACAACCTTGCAGCAGTAGACTCACCTTGCTGGAAAGGAGTTCCAATTAATCAGATTTCTCCTTTTCAAGCATTTGAGATTGTTACACCGAGTCGTACGAAGATGTTGGAAGTTTACAACAGTGTGAATCTGTCATTGTCTCAAGTACCCCCGTCTACTGCTGAGGATACTGTGAAAGTCATAGTTCATGAACCAAATGAAAGCACGATAGGCAGCATTCTGGAAAAAGGTGCAACGTCTTCTCCAAAGATGCCTTCAGTTATTGGTTCCTCCTTGCCTGCAGAACAGAAAAGTAGCAATTCTGTTAAAGCAGGAGAATTTTGTTCAAAAATGGGTTGCTTCCATCCAGCTACCAGTAGCGTCTATGAAGCATTTGGAGATGGTGGTGACTTCTATTCTTCCTGTTCCATACCACAAAATAAATATAAGCATAATTTAGTGTCTGGAAAAAGGATTGGACGTACAAGTTGTACGGAAAAGCATGCAGATGCAAGATTAAATAGCGACAACTCTTCTGGAAATGGTTTAAATCATTTGTCGTTTGATGCTGCAGAACATGTCCAGAATTTGCCTTCTGAGCTGGTGAAGGCATTTCATGGAGAATCAACTTCAAAAGTTGATATCAGGATTTTGGTTGATACATTGCATAGTCTATCAGGGTTGCTCCTTGCACATTGTTCAAATGGTTTGGATGCATTACACCAAAAAGACGTCATGTCCCTCGAGACTGTGATGAATAACCTTGATGTGTGTATAAATAGTGTTGGATCACAAGGTTCTCTCTCACCTGAGCAAAGGACTTCACAAAGCCTTGAGCAGTTTCATCAGCTTCATGCGGATTTGGGAGTGCTCAAGTCCCAGTCCCAGATGACAAAGATTGAAGGTGAAAATTTGGAGTGTCTATCAAATGATCGAAATGGTGTCGAGGAAACGAATCGATACATATTATCTGTCAAGAAAGACAAAGAAGCTGCTAGCTCTCATCGTCTTAGGAATGGGATTGACTTGATGAAAGAAGATAGCATGACCAAGGCTCTTAAGAAGGTTCTGAGTGAGAATTTTCATGACGATGAAGAACATCCTCAAACTCTCTTGTACAAGAATCTATGGCTTCAAGCAGAAGCTGCGTTATGTGCCTCCAATTTAAGAGCTCGTTTTAGTAGTGCAAAGTCAGAAATGGAGAAACATGAATCACCAAAAGTGAAAGAGCATGCCAAAAATCACGACCAACTATTCGTTTCTGGTGCATCTCCTGGTTCAAACACCATTGCGGAAGTGGCATCTAAGACTAAAGTTGGTTCTACCTCATTTGTTTCCGTCCAAACTTCCCCTACTGTGAGTGTCAGAAGTCATGCATCAGATGACGTGATTACTAGATTCAATATTCTCAAACACCGAGACGATGAAGCAAAGCTTAGGGATGCCGAAAATTTGGGAACACTATCTGATTTTGAGGTTTCAGTTAAACAAGGCATGGTTGAAAAATCCGCACTTGAGAAGGAACAAACTGCAGGCCCACATGTGAAAGACATGGATTCTTCCTTCCCCTCTTCAAAGGTCAAGGGGAATGATTCTGGGCCAGCTCCTCAGTCGACTTCCCTCATCTTGACCAGGACCAGTCATATAGACGATGTTATGTCAAGATTTCAAATTCTGAAATCTCGAGACGAGCACGTAAGTTCTTTGAATGTGGGAAAGGTGCAGAAAGTTACAAGTTCCCATTGCAGTGAGATTGAGAAGGCGGCACCTGAAGGTGTCATCTCGATGATACATCACCCCATTGCAGATAACAAAAATGAAGTTGATGATTTAGATGGTTCAGTAGTGGGCAGACTAGATGTCCTAAGGAGTCGGGGAAACAACATAAGCCCAACCCCTGCAGGAGAAAACTTACAGGAGTATTGGACATCTGTTGAAAACAAAGTAAAAATGGAACCTTTCTTGTGGCCTGAAGCTGGGAAGGATAGTAGAAGCCATTTTGAGGGCAAGCTTCCTGCTGGTTGTTCTAATGGGTCCTCATCAGACTGGGAACATGTTCTCTGGTGCGATTGA 3336 42.75 MGFAPFGVGNGGSSSSFSNLSPLAPPFTLDRSVTKPLSTPLVDITEPEPEFGVGGGVPLNPLQHNWLPSTSKTSAHDFFSSEFDWLPFSTGSGFPRSQAMMDPSHNHGPLLGRLTITSTDLSSYHGSSDGVTTSMGKPKPYYPSYAATSSNKAGPTVIVDQPSYDWLSNSHVVTFEGPPCTDFSRGSSASERSTEEASHSVDVLDLNKCNEFVREYPNEELFSERNLNIERISNMDAHSAFPGCHPKTRTPPSNPASSSQNSPFLKKPPYLEISREQDSRLNVTASIVNSPATFSIRPSVVSTDSFAWNVGSCHVSDYGYDSFEAKQGGNNLSNLKELLPVNSESKEFVSAENYDTCIDKNDPVITEPSSTKIHDLRNNIHSAKDSPDRRLKAGMRLHIPDASPHFSLDPKGIETATTTESSSESFDQYNLAAVDSPCWKGVPINQISPFQAFEIVTPSRTKMLEVYNSVNLSLSQVPPSTAEDTVKVIVHEPNESTIGSILEKGATSSPKMPSVIGSSLPAEQKSSNSVKAGEFCSKMGCFHPATSSVYEAFGDGGDFYSSCSIPQNKYKHNLVSGKRIGRTSCTEKHADARLNSDNSSGNGLNHLSFDAAEHVQNLPSELVKAFHGESTSKVDIRILVDTLHSLSGLLLAHCSNGLDALHQKDVMSLETVMNNLDVCINSVGSQGSLSPEQRTSQSLEQFHQLHADLGVLKSQSQMTKIEGENLECLSNDRNGVEETNRYILSVKKDKEAASSHRLRNGIDLMKEDSMTKALKKVLSENFHDDEEHPQTLLYKNLWLQAEAALCASNLRARFSSAKSEMEKHESPKVKEHAKNHDQLFVSGASPGSNTIAEVASKTKVGSTSFVSVQTSPTVSVRSHASDDVITRFNILKHRDDEAKLRDAENLGTLSDFEVSVKQGMVEKSALEKEQTAGPHVKDMDSSFPSSKVKGNDSGPAPQSTSLILTRTSHIDDVMSRFQILKSRDEHVSSLNVGKVQKVTSSHCSEIEKAAPEGVISMIHHPIADNKNEVDDLDGSVVGRLDVLRSRGNNISPTPAGENLQEYWTSVENKVKMEPFLWPEAGKDSRSHFEGKLPAGCSNGSSSDWEHVLWCD 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10213286 10217456 - CmaCh18G013440.1 Cma18g01344 314682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01344 1111 MobiDBLite consensus disorder prediction 926 960 - -
Cma18g01344 1111 MobiDBLite consensus disorder prediction 944 960 - -
Cma18g01344 1111 MobiDBLite consensus disorder prediction 250 265 - -
Cma18g01344 1111 MobiDBLite consensus disorder prediction 238 266 - -
Cma18g01344 1111 PANTHER OS08G0157800 PROTEIN 1 1109 - -
Cma18g01344 1111 PANTHER OS08G0157800 PROTEIN 1 1109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01344 - - - bhj:120081084 1477.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00013 Cma18g01344 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00013 Cma-Chr16:80600 Cma18g01344 Cma-Chr18:10213286 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g951 . . Bda05g00147 . . . . . Cmo16g00015 Cmo18g01377 . . . . . . Cpe14g00013 . . . . . . . . . . . . . . Cone1ag1029 Cone5ag0736 . . . . . . . . . . . . . . . . . Cma16g00013 Cma18g01344 Car16g00012 Car18g01256 Cpe09g00008 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013112 1 1 0 0 0 0 2 0 0 1 0 0 2 1 1 2 0 2 2 0 1 1 2 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01344 Cma_Chr18 FPKM 8.877583 8.669206 9.136331 9.983352 7.58958 7.911257 7.066481 9.540839 8.946839 9.182659