Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01345 ATGGCTAATTTGCAAATAGTTCCGGCTCACACCCCATTTCATGTGGAGCCGCAGCTGGTGGAGATGATGGTTCCCCTTTATTCTCATGGTTGCGCCAACAAAATCCACAAGGCTCTCTCCCATCTCAAAGGGATATATTCAGTTAACGTAGATTATGACGAGCAGAAAGTGACGGTGTGGGGAATATGCAACAAAAACCAAGTGTTGAGCACTGTGAGAAGCAAGAGAAAAGCAGCTCGTTTTTGGAACAAGGATGATGATGATAATAATAATAATAATAATAATAATGATCCACAAGCAGAAGAAGAAGGTCTAAACTCAAGAAGGCCTTCTTTTGGTGTTAACAAGCTTCGTTCCCTCAGTTTCAAATTAGCCTGCAAGAAGGTTTTCACCACTACAAGATCATATTCCTTGCGTATCTTTGGGGCTCCTACTGTTTCCTAA 444 41.67 MANLQIVPAHTPFHVEPQLVEMMVPLYSHGCANKIHKALSHLKGIYSVNVDYDEQKVTVWGICNKNQVLSTVRSKRKAARFWNKDDDDNNNNNNNNDPQAEEEGLNSRRPSFGVNKLRSLSFKLACKKVFTTTRSYSLRIFGAPTVS 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10220303 10221073 - CmaCh18G013450.1 Cma18g01345 314683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01345 147 MobiDBLite consensus disorder prediction 81 110 - -
Cma18g01345 147 Pfam Heavy-metal-associated domain 23 61 IPR006121 GO:0046872
Cma18g01345 147 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 109 IPR045181 GO:0046872
Cma18g01345 147 CDD HMA 21 61 IPR006121 GO:0046872
Cma18g01345 147 SUPERFAMILY HMA, heavy metal-associated domain 18 83 IPR036163 GO:0046872
Cma18g01345 147 Gene3D - 16 81 - -
Cma18g01345 147 PANTHER HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01345 - - - cmax:111467638 283.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01345 Cma-Chr18:10220303 Cma04g02094 Cma-Chr4:14604524 3.37E-10 dispersed
Cma18g01345 Cma-Chr18:10220303 Cma06g00327 Cma-Chr6:1537300 6.08E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g950 . . . . . . . . . Cmo18g01379 . . . . . . . . . . . . . . . . . . . . . Cone1ag1030 Cone5ag0737 . . . . . . . . . . . . . . . . . . Cma18g01345 . Car18g01257 Cpe09g00007 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014623 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 1 1 2 1 1 0 1 0 1 1 0 1 1 1 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01345 Cma_Chr18 FPKM 2.461539 4.320755 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0