Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00058 ATGGCCGGAGATGGATTTGGATTCCCTGTGGAATCTCAGGTGGTTTCGGTGAAGAAGAAGACGGCGACGACGACGACGAAGAAGAAGAATACTGTAGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGACTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTTGATCCTCTGTTGTCGTATCCTTCCACTATCTTAGGGAGAGAAAGCGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATAATCACTGCAGACGAGGTGCTGCTTAGAGACCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAATTGCAGAGACGGTTGCCTTCCACAAATTCCCTATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCCACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAGTTTCGTGCCTTAGAGGTTGCATTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTGGAGACTGATGCGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGATCGAGTGCGCAAGCTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCGGAGCTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGCGGCTCTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGCAATTACTTTTCGAGGAGAGAATGATGTTGAAGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAGATAGAAGGTACATTAAACAAACTAATCACGTTGCGGGAATACATTGATGACACAGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTGATTCAGCTTGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCGATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTAAGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCACGATCCAAAGGTCTCGTTGGATCTTGAACATTACGCTCATAGTGTTTCCATGGTTTTGA 1230 43.17 MAGDGFGFPVESQVVSVKKKTATTTTKKKNTVVSRSWVSLDHEGRTTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRESVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSLYQGQGEEEEPSTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASAITFRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVSGHPDRNSLCNHLCVTKLVCTIQRSRWILNITLIVFPWF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 314382 318727 + CmaCh19G000580.1 Cma19g00058 314746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00058 409 MobiDBLite consensus disorder prediction 125 145 - -
Cma19g00058 409 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 17 370 - -
Cma19g00058 409 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Cma19g00058 409 Gene3D - 19 108 - -
Cma19g00058 409 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 370 IPR039204 -
Cma19g00058 409 Coils Coil 200 227 - -
Cma19g00058 409 CDD Mrs2_Mfm1p-like 37 372 IPR039204 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00058 Cma-Chr19:314382 Cma01g00188 Cma-Chr1:840566 2.24E-101 dispersed
Cma17g00187 Cma-Chr17:979088 Cma19g00058 Cma-Chr19:314382 1.12E-163 wgd
Cma19g00058 Cma-Chr19:314382 Cma08g01112 Cma-Chr8:6896552 7.57E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00058 K16075 - csv:101220452 654.44