Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00062 ATGGAAGAGCTTGAAGAAGCTAACAGAGCCGCCATAGATAGCTGCCATGGAGTTTTGAATCTTTTAGCTCAGCCTTCTCCTCAAGAACAAGGTGAGCTGAGGAAGAATTTAATGGTGGAAACTGGAGAGGCTGTTTTTAAGCTCAAGAAAGTGGTGTCTCTTTTGAATTCTGGGTTTGGTTATGCAAAAGTTAGAAGATTCAAGAACATTCCTCTGCCTTTGCCCCAAAAATTTCTCTTAGATCCTCCAAACAATGGTTTGAATGGTAAAATTTCAGTTTTTTTGGGAAACCCAGATTTGGAAATGGATCAAAATCATAAGAATTCCCTCAAAATTCATAAACAAGCTGCTCCATCTTTGAACTTTAGCTTCCCCCAGCAACAGCAGCAGCAGAGGAAGCAAGCAGAGATGATGTTTGTTAGGAGTAACAGTGGAATGAATATGAATTTTGATGCTTCTAAGTGCACATTGACAATGTCATCTGCTAGATCTTTTATTTCTTCGTTGAGTATGGATGGGAGCGTTGCCGACGGGAGCTCGTTCCATTTGATCGGGCCGTCGTCGACGATGTCGGGCGATAACAAGAGGAGGTTTTCTGGAAGGGGAGATGAAGGGAGCTTGAAATGTGGTAGCACTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATCGAGTGAAGAGATCAATTAAGGTTCCTGCTATAAGTAACAAACTTGCTGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCCAGGGGTTATTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCACGTCGAGCGATGCTTAGAGGACCCGTCGATGCTTATCGTAACGTACGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 933 43.41 MEELEEANRAAIDSCHGVLNLLAQPSPQEQGELRKNLMVETGEAVFKLKKVVSLLNSGFGYAKVRRFKNIPLPLPQKFLLDPPNNGLNGKISVFLGNPDLEMDQNHKNSLKIHKQAAPSLNFSFPQQQQQQRKQAEMMFVRSNSGMNMNFDASKCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTMSGDNKRRFSGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 331030 333649 + CmaCh19G000620.1 Cma19g00062 314750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00062 310 Gene3D WRKY domain 226 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g00062 310 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g00062 310 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00062 310 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00062 310 Pfam Plant zinc cluster domain 206 240 IPR018872 -
Cma19g00062 310 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00062 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 310 IPR044810 GO:0003700
Cma19g00062 310 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 3 310 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00314 Cma19g00062 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00314 Cma-Chr8:1790125 Cma19g00062 Cma-Chr19:331030 9.47E-127 dispersed
Cma17g01219 Cma-Chr17:8415383 Cma19g00062 Cma-Chr19:331030 1.66E-121 dispersed
Cma19g00062 Cma-Chr19:331030 Cma20g00968 Cma-Chr20:4913335 2.97E-52 dispersed
Cma19g00062 Cma-Chr19:331030 Cma02g01770 Cma-Chr2:9870246 2.05E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36850 PF03106 WRKY 9.90E-27 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00062 - - cmax:111466947 627.476