Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00079 | ATGGCTTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGAGGCGGCGGTGGTGGTGGCGGTGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGAGTGTATTTTTGCTCCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCTTCATGTCCCTGTTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATACCTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGATTCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAATCATTATCAAGAGAGCCAAACATTGGCTAGAAGAAGATCAGCTTCTTGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA | 681 | 47.28 | MASSSSSSSTANSSVSGGGGGGGGGGGGGGSPCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQLMQAKAQLAQTLMDSGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLARRRSASCHGDLGELQALALRMMRN | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 455219 | 457045 | + | CmaCh19G000790.1 | Cma19g00079 | 314767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00079 | 226 | Pfam | Lateral organ boundaries (LOB) domain | 32 | 130 | IPR004883 | - | |
Cma19g00079 | 226 | Coils | Coil | 112 | 132 | - | - | |
Cma19g00079 | 226 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 16 | 26 | 225 | - | - | |
Cma19g00079 | 226 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 26 | 225 | - | - | |
Cma19g00079 | 226 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cma19g00079 | 226 | ProSiteProfiles | LOB domain profile. | 31 | 133 | IPR004883 | - | |
Cma19g00079 | 226 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01756 | Cma19g00079 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01756 | Cma-Chr2:9827341 | Cma19g00079 | Cma-Chr19:455219 | 1.95E-92 | dispersed | |
Cma17g00028 | Cma-Chr17:119807 | Cma19g00079 | Cma-Chr19:455219 | 1.89E-56 | dispersed | |
Cma19g00079 | Cma-Chr19:455219 | Cma19g00080 | Cma-Chr19:461193 | 1.44E-57 | tandem | |
Cma19g00079 | Cma-Chr19:455219 | Cma02g01755 | Cma-Chr2:9825835 | 8.61E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36853 | PF03195 | LOB | 9.10E-37 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00079 | K13944 | - | csv:101214521 | 287.345 |