Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00079 ATGGCTTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGAGGCGGCGGTGGTGGTGGCGGTGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGAGTGTATTTTTGCTCCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCTTCATGTCCCTGTTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATACCTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGATTCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAATCATTATCAAGAGAGCCAAACATTGGCTAGAAGAAGATCAGCTTCTTGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 681 47.28 MASSSSSSSTANSSVSGGGGGGGGGGGGGGSPCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQLMQAKAQLAQTLMDSGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLARRRSASCHGDLGELQALALRMMRN 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 455219 457045 + CmaCh19G000790.1 Cma19g00079 314767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00079 226 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
Cma19g00079 226 Coils Coil 112 132 - -
Cma19g00079 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 26 225 - -
Cma19g00079 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 225 - -
Cma19g00079 226 MobiDBLite consensus disorder prediction 1 17 - -
Cma19g00079 226 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Cma19g00079 226 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01756 Cma19g00079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01756 Cma-Chr2:9827341 Cma19g00079 Cma-Chr19:455219 1.95E-92 dispersed
Cma17g00028 Cma-Chr17:119807 Cma19g00079 Cma-Chr19:455219 1.89E-56 dispersed
Cma19g00079 Cma-Chr19:455219 Cma19g00080 Cma-Chr19:461193 1.44E-57 tandem
Cma19g00079 Cma-Chr19:455219 Cma02g01755 Cma-Chr2:9825835 8.61E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36853 PF03195 LOB 9.10E-37 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00079 K13944 - csv:101214521 287.345