Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00080 ATGACAGGTTCTGGTTCTCCCTGTGGAGCCTGTAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGCGTTTTTGCGCCATATTTCTGCCATGAACAAGGCGCTACTCATTTTGCTGCTATTCATAAGGTGTTTGGTGCTAGCAATGTGTCTAAGCTTCTTGCTCGGTTGCCTGTTAGTGAGCGCTGTGAGGCTGCGGTTACTATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTAGCTTCTCTTAAGGAACAAGCAGCAGAAAACATGATGAACGTGTCTGGTAATAGAGGTGAGGCTGAGAAGAATAGCAGAAAGGTTCCTTGTCATCCACAAGATCTCCATAGCTGGTTTCAGTCGGAGCAACCGAACGTAATGCTCGAGTTCAATCCGAATCCGACTCGGAATAATTCGGCATCGAACCCTTATTATGATGAGAATTATAGCATTATGGTTAACTCTCAGTCCAATGAGAACTATGAGCATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCTATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGTAATAGGCATTGGTAA 717 42.96 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAENMMNVSGNRGEAEKNSRKVPCHPQDLHSWFQSEQPNVMLEFNPNPTRNNSASNPYYDENYSIMVNSQSNENYEHHMAKMEESGSYGSFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNRHW 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 461193 462916 - CmaCh19G000800.1 Cma19g00080 314768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00080 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cma19g00080 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - -
Cma19g00080 238 Coils Coil 87 114 - -
Cma19g00080 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 235 - -
Cma19g00080 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01755 Cma19g00080 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01755 Cma-Chr2:9825835 Cma19g00080 Cma-Chr19:461193 3.54E-153 dispersed
Cma08g00271 Cma-Chr8:1580070 Cma19g00080 Cma-Chr19:461193 1.83E-57 dispersed
Cma17g00029 Cma-Chr17:126154 Cma19g00080 Cma-Chr19:461193 7.16E-51 dispersed
Cma19g00079 Cma-Chr19:455219 Cma19g00080 Cma-Chr19:461193 1.44E-57 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36854 PF03195 LOB 5.40E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00080 K13945 - csv:101214764 423.705