Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00080 | ATGACAGGTTCTGGTTCTCCCTGTGGAGCCTGTAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGCGTTTTTGCGCCATATTTCTGCCATGAACAAGGCGCTACTCATTTTGCTGCTATTCATAAGGTGTTTGGTGCTAGCAATGTGTCTAAGCTTCTTGCTCGGTTGCCTGTTAGTGAGCGCTGTGAGGCTGCGGTTACTATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTAGCTTCTCTTAAGGAACAAGCAGCAGAAAACATGATGAACGTGTCTGGTAATAGAGGTGAGGCTGAGAAGAATAGCAGAAAGGTTCCTTGTCATCCACAAGATCTCCATAGCTGGTTTCAGTCGGAGCAACCGAACGTAATGCTCGAGTTCAATCCGAATCCGACTCGGAATAATTCGGCATCGAACCCTTATTATGATGAGAATTATAGCATTATGGTTAACTCTCAGTCCAATGAGAACTATGAGCATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCTATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGTAATAGGCATTGGTAA | 717 | 42.96 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAENMMNVSGNRGEAEKNSRKVPCHPQDLHSWFQSEQPNVMLEFNPNPTRNNSASNPYYDENYSIMVNSQSNENYEHHMAKMEESGSYGSFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNRHW | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 461193 | 462916 | - | CmaCh19G000800.1 | Cma19g00080 | 314768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00080 | 238 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Cma19g00080 | 238 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 235 | - | - | |
Cma19g00080 | 238 | Coils | Coil | 87 | 114 | - | - | |
Cma19g00080 | 238 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 235 | - | - | |
Cma19g00080 | 238 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01755 | Cma19g00080 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01755 | Cma-Chr2:9825835 | Cma19g00080 | Cma-Chr19:461193 | 3.54E-153 | dispersed | |
Cma08g00271 | Cma-Chr8:1580070 | Cma19g00080 | Cma-Chr19:461193 | 1.83E-57 | dispersed | |
Cma17g00029 | Cma-Chr17:126154 | Cma19g00080 | Cma-Chr19:461193 | 7.16E-51 | dispersed | |
Cma19g00079 | Cma-Chr19:455219 | Cma19g00080 | Cma-Chr19:461193 | 1.44E-57 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36854 | PF03195 | LOB | 5.40E-36 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00080 | K13945 | - | csv:101214764 | 423.705 |