Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00084 ATGGAATCCTCTTATTTTTCGTTCTCCGATTCCGATTTCTCGACGGGATCTTCGTTCGGATCGGCCGAATCGTCGTTCTCATGGAGCGAATTTTTCCCGATCCCACTGCCGGATGAGTTTCTCGGAAATCAAACGGAATCGGAATCGAAAATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATCGATTTCGCGGAGGAGAAACAGAGGAAAACGACGGCGGAGAAGAGTTACAGAGGAGTAAGGCGACGGCCATGGGGAAAATACGCGGCGGAGATTAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACATTTGATAGCGCGGAAGCCGCCGCGTTAGCGTATGATCAAGCGGCATTTTCAATGAGAGGAGCACTGGCGGTTCTGAATTTTCCGGTCGAAATGGTGAGGGAATCACTCCAGGATATTAAGTATCAACTGGAAGAAGGATGCTCGCCGGTGGTGGCTTTGAAGAGAAAACACTCTCTGAGAAGGAAATCGGCGGCGGAGGCTGCGGCGGCGGTGGAGAAGAAGAAGATGAAGAAGAAGAAGAATATGGTGATTTTTGAAGATTTGGGAACAGAGTATTTGGAAGAACTGTTGATGCTAAGTTCATATGAGAGTTGTAGCATCAATCCTTTCTGA 654 48.32 MESSYFSFSDSDFSTGSSFGSAESSFSWSEFFPIPLPDEFLGNQTESESKIAVKEEIEVSSIDFAEEKQRKTTAEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGALAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSLRRKSAAEAAAAVEKKKMKKKKNMVIFEDLGTEYLEELLMLSSYESCSINPF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 506769 507422 + CmaCh19G000840.1 Cma19g00084 314772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00084 217 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cma19g00084 217 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Cma19g00084 217 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677
Cma19g00084 217 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Cma19g00084 217 PANTHER DNA-BINDING DOMAIN 46 206 IPR044808 GO:0003700|GO:0009873
Cma19g00084 217 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Cma19g00084 217 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Cma19g00084 217 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Cma19g00084 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 46 206 - -
Cma19g00084 217 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00084 217 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00294 Cma19g00084 CCT
Cma02g01751 Cma19g00084 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00294 Cma-Chr8:1686346 Cma19g00084 Cma-Chr19:506769 7.37E-56 dispersed
Cma19g00084 Cma-Chr19:506769 Cma07g00206 Cma-Chr7:957489 6.70E-33 dispersed
Cma14g01810 Cma-Chr14:12979490 Cma19g00084 Cma-Chr19:506769 5.36E-44 wgd
Cma17g00167 Cma-Chr17:862949 Cma19g00084 Cma-Chr19:506769 1.94E-42 wgd
Cma19g00084 Cma-Chr19:506769 Cma02g01751 Cma-Chr2:9801242 2.46E-98 wgd
Cma19g00084 Cma-Chr19:506769 Cma06g01330 Cma-Chr6:8751295 5.17E-48 wgd
Cma19g00084 Cma-Chr19:506769 Cma08g01086 Cma-Chr8:6782139 7.99E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36855 PF00847 AP2 1.10E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00084 K14516 - csv:101220325 265.003