Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00085 ATGGGAAAGGAGTCATTACAAGTACTAAATGCATTAGATGTTGCCAAAACACAATGGTACCATTTTACAGCAATCATTATTGCTGGAATGGGATTCTTCACTGATGCATATGATCTATTCTGTATATCTCTTGTCACGAAATTACTTGGAAGAATCTACTATCATGTTGATGGTGCGCCAAAGCCTGGATCATTGCCTCCAAACGTTGCTGCTGCTGTTAATGGTGTGGCGTTCTGTGGAACGTTGGTAGGGCAACTCTTCTTCGGCTGGTTGGGCGATAAAATGGGGCGAAAACGAGTCTATGGCGTTACTCTAATGCTGATGGTTGTTTGTTCCATAGGCTCTGGCCTCTCCTTTGGCCATAATTCACAATCTGTCATGACTACTTTATGCTTCTTTCGATTCTGGCTTGGGTTCGGTATTGGTGGCGATTACCCTCTTTCGGCAACGATCATGTCGGAATACTCGAATAAGAAGACTCGTGGTGCGTTCATTGCTGCTGTGTTTGCTATGCAGGGGTTTGGAATTTTGGGTGGAGGGATATTCGCCGTTTTCATCTCTATGGCATTTAAGGCTAAGTTTGATGCTCCAGCTTATGCAGTTGATCCTGTTGCCTCCACTGTGCCCCAAGCTGATTATATTTGGAGGATTATACTAATGGTTGGAGCTCTCCCTGCTGCTCTTACTTACTTCTGGAGGATGAAAATGCCCGAAACTGCACGCTACACGGCGCTTGTAGCGAAAGATACAGCCCAAGCTGCATCAGACATGTCAAAAGTTTTGCATATGGATATTGAGGCAGAAACTCCAGAGTCTGCTCAGTGTCACGGTGATGCTCGAAAGTGGGAACTAGAGTCTGCTCAGTGTCACGGTCATGCTCAAAAGTGTGATCGTGACACTCAGCAGCTGCGAAATGCGTATGGATTGTTCTCGAAAGAGTTTCTTCGTCGTCATGGAACTCACTTACTTGGAACTGCTATTTCTTGGTTTTTATTTGACATTGCATTCTACAGCCAGAACTTATTCCAGAAAGATATCTTCACCGCAATTGGATGGATTCCTCCAGCAGCCACCATGAATGCAGTTGAAGAAGTCTTCAGAATAGCAAGAGCTCAAACATTGATAGCCCTCTGCAGCACTGTGCCTGGCTACTGGTTCACAGTGGCTTTCATTGACAGAATTGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTTTAGCCATTCCATACCATCACTGGACTTTGAAGGACAATCAAATTGGCTTCATAGTCCTCTACTCACTGACGTTCTTCTTCGCCAACTTCGGACCGAACGCAACCACTTTCGTCGTCCCAGCTGAGATCTTTCCAGCACGATTCCGTTCTACTTGCCATGGGATATCAGCAGCATCTGGAAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAGGACAAGAACAGAACCGATGCAGGATATCCTCCAGGCATTGGAGTCAAGAACTCGCTTCTTTTGCTGGGTGGACTTAACGTGTTGGGAATGTTGTTTACTTTTCTGGTGCCTGAAGCCAAGGGAAAATCATTGGAAGAGATGTCCGGCGAGAACGAAGATGGAACCATTGAAGAACTTGGGAGGCAGACGCAGACATTTAGCCATAGAACAGTTTCAGAGGCTTAA 1698 45.35 MGKESLQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGSLPPNVAAAVNGVAFCGTLVGQLFFGWLGDKMGRKRVYGVTLMLMVVCSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAVFISMAFKAKFDAPAYAVDPVASTVPQADYIWRIILMVGALPAALTYFWRMKMPETARYTALVAKDTAQAASDMSKVLHMDIEAETPESAQCHGDARKWELESAQCHGHAQKCDRDTQQLRNAYGLFSKEFLRRHGTHLLGTAISWFLFDIAFYSQNLFQKDIFTAIGWIPPAATMNAVEEVFRIARAQTLIALCSTVPGYWFTVAFIDRIGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNQIGFIVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNQDKNRTDAGYPPGIGVKNSLLLLGGLNVLGMLFTFLVPEAKGKSLEEMSGENEDGTIEELGRQTQTFSHRTVSEA 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 510885 512582 + CmaCh19G000850.1 Cma19g00085 314773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00085 565 CDD MFS_PhT 25 531 - -
Cma19g00085 565 TIGRFAM 2A0109: phosphate:H+ symporter 11 541 IPR004738 GO:0005315|GO:0006817|GO:0016021
Cma19g00085 565 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 547 - -
Cma19g00085 565 Pfam Sugar (and other) transporter 26 539 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma19g00085 565 Gene3D MFS general substrate transporter like domains 20 265 IPR036259 -
Cma19g00085 565 Gene3D MFS general substrate transporter like domains 300 555 IPR036259 -
Cma19g00085 565 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 532 IPR020846 GO:0022857
Cma19g00085 565 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 547 - -
Cma19g00085 565 SUPERFAMILY MFS general substrate transporter 12 539 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00085 Cma-Chr19:510885 Cma10g00617 Cma-Chr10:2851665 3.29E-12 dispersed
Cma19g00085 Cma-Chr19:510885 Cma19g00086 Cma-Chr19:514822 0 tandem
Cma14g01811 Cma-Chr14:12987095 Cma19g00085 Cma-Chr19:510885 0 wgd
Cma17g00166 Cma-Chr17:859051 Cma19g00085 Cma-Chr19:510885 0 wgd
Cma19g00085 Cma-Chr19:510885 Cma06g01328 Cma-Chr6:8742265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00085 K08176 - qsu:111998651 908.672