Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00105 ATGAAGAGCGACGTTAAGATAAGAAGGGGGAGGAGCGCTGGAAGAGGGGGGAATATTAGGAAGATAATGAAGTGCTTATGTTCTGGTGAGAAAGCAGCTGGGGATGATGGGATTCCTGCATCAGAATCGCCTTTGCCTGTGGAGAATTCAGCCAGTGGGCGCTCTTCACGGACTAGCGAGATCAACAAGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCCTCGCTTCGTGAGAGTGGTTCTTTGAATTATGAGGAAGCAAGAGCATTACTGGGGAGATATGAATATCAAAAGGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATTGCTGCTATAACTAGTAAGATAATGATCTCCATAGGTAGAAGAGGAGACTGTCCGAGAAGACGATCGCAAAGTTTTACTACTCCACCAATGTCGATGCATACTGTCAGTTTACTCTTGGAAGGCATCTTTTTCAAATCAAAATCACTGCAAGCCCTTGGGAAGTTCGGAGAAGCTGCTCGAACTTGCAAAGTTATTCTGGACATACTCGAATCTTCGTTCCCTGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACTGTTACAAAGTCAGCGGAGCTGCTACCGGAGTTATGGAAGCTAGCTGATGGTTCTCAAGAAGCGATCCTTTCGTACCGGCGGGCACTTCTTCATCTGTGGAACCTTGATGCGGGAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAACCGAAGCATGCCCTCCTAATCTTCGGTCGCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTTCTTAGAAAAGTTATTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATAGACAAGAAAGGTACCATGCTCTAGCTCTTTGTTATTATGGAGCAGGTGAAGACTTAGCTGCTTTGAATCTGTTGAGGAAAGTGTTGGGCAGTCATGAGGATCCTAAATCACTTCCCCCTTTACTGATGGCGTCGAAGATTTGTGGAGAAAACTGCGAGCTTGCCGAAGAGGGAACGAGTTTCGCTTATAGAGCTCTGAAAAGCCTGGATAATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTATCTCACTGTCTGTGTATTCGAAATTCGCCGTTGCAGATTCCGAGAAGTCCTCCAGACAATGTGAGGCAATGGAGGCCATCGAAGCTGCACGGAAGAAGACTAGAATGACCAACCCGAATGTTCTCTATCATTCGAGTCTTCAATATGCAGACGAGAGGAATTTAGATTCAGCATTTCATTATGCAAGGAAGTGTCTCAAGCTGGAAGGTGGATCTAATATCAAAACTTGGTTACTACTGGCTCGGATTCTCTCCGCCCAACAACGATATACCGATAGCGAAAGTATTATAAATGCAGCTCTGGATCAAACAGGGAAATGGGATCAAGGCGAGTTGCTTCGAACAAAAGCAAAGCTTCTACTTGCACAGGATGAGTTTAAAGGTGCTATCGAGACTTACAGTCGATTACTAGCTATTTTTCAAATTCGGAGTAAAAGTTTCGGTTCGGGAGATAAGAAGCTACGGAGCAGTACTAGAAGATTGCAAATGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTCGCAGTGGCACGATGCCGAGGCCTGCCTTTCGAAGTCAAAGGCCATCTGTTCTCATTCGGCTTCTAGATGTCATATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCATTCATGTCCCGAGCTTGGTTTCATCTGCCGTGACTATCAGACATCTCGGCCACCGATCACATCCCGTTGTACGCAGTTTTTTGATGGATGCTCTACGGCTCGACCAGACGAACCATGCTGCATGGTACAATCTCGGGCTGTTCTACAAATCTGAAGGAACCAAGTCTTCATTGGTTGAAGCTGTTGAATGTTTTGAGGCTGCAGCTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2193 44.37 MKSDVKIRRGRSAGRGGNIRKIMKCLCSGEKAAGDDGIPASESPLPVENSASGRSSRTSEINKKPEIGNIEEAESSLRESGSLNYEEARALLGRYEYQKGNIEAALHVFEGIDIAAITSKIMISIGRRGDCPRRRSQSFTTPPMSMHTVSLLLEGIFFKSKSLQALGKFGEAARTCKVILDILESSFPEGLPENFGADCKLQETVTKSAELLPELWKLADGSQEAILSYRRALLHLWNLDAGTTARIQKEFAIFLLYSGTEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVILKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILHRQERYHALALCYYGAGEDLAALNLLRKVLGSHEDPKSLPPLLMASKICGENCELAEEGTSFAYRALKSLDNGCDQLEGVANCLLGISLSVYSKFAVADSEKSSRQCEAMEAIEAARKKTRMTNPNVLYHSSLQYADERNLDSAFHYARKCLKLEGGSNIKTWLLLARILSAQQRYTDSESIINAALDQTGKWDQGELLRTKAKLLLAQDEFKGAIETYSRLLAIFQIRSKSFGSGDKKLRSSTRRLQMEVWHDLALVYIRLSQWHDAEACLSKSKAICSHSASRCHITGMLYEAKGLYKEALKAFMAALDIDPIHVPSLVSSAVTIRHLGHRSHPVVRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLVEAVECFEAAAFLEESAPVEPFR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 634173 638200 + CmaCh19G001050.1 Cma19g00105 314793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00105 730 Pfam Tetratricopeptide repeat 624 650 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 495 528 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 688 724 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 584 617 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 531 564 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 618 651 IPR019734 GO:0005515
Cma19g00105 730 SMART tpr_5 460 493 IPR019734 GO:0005515
Cma19g00105 730 Gene3D Tetratricopeptide repeat domain 335 726 IPR011990 GO:0005515
Cma19g00105 730 PANTHER PROTEIN NPG1 13 730 IPR043376 -
Cma19g00105 730 SUPERFAMILY TPR-like 340 561 IPR011990 GO:0005515
Cma19g00105 730 MobiDBLite consensus disorder prediction 59 73 - -
Cma19g00105 730 SUPERFAMILY TPR-like 532 702 IPR011990 GO:0005515
Cma19g00105 730 MobiDBLite consensus disorder prediction 33 75 - -
Cma19g00105 730 ProSiteProfiles TPR repeat profile. 618 651 IPR019734 GO:0005515
Cma19g00105 730 PANTHER PROTEIN NPGR2 13 730 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01732 Cma19g00105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01327 Cma-Chr1:9469586 Cma19g00105 Cma-Chr19:634173 0 dispersed
Cma05g00137 Cma-Chr5:598929 Cma19g00105 Cma-Chr19:634173 1.08E-176 dispersed
Cma09g00720 Cma-Chr9:3420603 Cma19g00105 Cma-Chr19:634173 0 dispersed
Cma14g01828 Cma-Chr14:13064593 Cma19g00105 Cma-Chr19:634173 0 wgd
Cma19g00105 Cma-Chr19:634173 Cma02g01732 Cma-Chr2:9733140 0 wgd
Cma19g00105 Cma-Chr19:634173 Cma06g01307 Cma-Chr6:8641597 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00105 K21843 - csv:101223229 1238.79