Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00126 ATGCTAGCCGGCGCTGATACAAGTTCAGTGTCGTTGCAGTGGGCAATGGCAGTGCTATTGAGGAATCCAGAAAAATTAGCAAAAGCTCAAGTGGAAATCAGGCAAGTTTTGGGGAAGAACAAACCAATGGAGGAAGCGGACATTCCGAGGCTGCCATATCTGCAAGCGGTGGTGAAGGAAGCTTTACGACTGCATCCAGCGGGTCCATTGTTGCTACCTCGTAAGGCGAAACAAGAAGTGGAGATCGCCGGTTTCACAATCCCTAAAGATTCTCAGAGGACGGAGCTTCGAGCTGATTCCGTTCGGCGGAGGGAGAAGGATTTGCCCTGGACTACCACTAGCTGTGAGAATGATGCCTTTGATGTTGGCGCGTGGACCAGAGCCATCCATTGGATCGTCTTTTTGCAGAGAGAGAAAAGCAGTGGCTTAGTAGCAGTCCGTAACAGTAGAGTGTTGTTTGTTGCCGTATCCTCGACCGCATTTCATGGATCTGCAAGCCAATATACCAGCATTGCTGCCTCCCGACAATCTTCACCACACATATACTTATCTCCTTCCTTGCAGCCATACCTGCAAACAACGACCACAGAAATTCCAACAGAGCATGGTCCTAGGAGTGCGCCCTTACCTATTCGACATCATCGGCGGCGGCGGCGTATACGACCTCATGTGATTGCTCCTACACCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAACCCCTTACTGCGGCACCCTTTGGGTCACCTTGTGGCTGCGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTCTTTCCTGTGATGAACGACCTTGAAAGTGAGATTGCAGCGGGGACTTACTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCTAAAGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGATATAAATTTAGTACCTCTAGGAGAGAAATTCGATAATACCACAGCAGTACTGACTTACAGAAGGTTTTGGGATAAAAAAGTGCGTCTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGTTATCCAGGGATTCCTTCTTCACCACCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAGGTGTTGGCGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAGCATCAAAACAATTGGTATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTTTCCATCTTTTTTAAATGGAGAAAAGTTGGAAGACCGTCTAATGCTGTTGGCCCTGTCTTCACATCATCAATTAACAAAAGATCTGGTCTAGGATCGGGTTTATCAACTAGCATTGCTAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTATTCAATCTGTTAGAACATTTGGACTTTCTGAACTTGAGAAAGCAACAAACAAGTTTAGTTCGAAAAGGATTTTAGGCGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGCAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACAGGATAATCAGAATAGAGACCGTGAATTTATCGCAGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGTATATGCATGGAAGGCCGTACTCGCTGCTTGGTTTATGAGCTTATCCATAATGGCAGTGTTGAGTCTCACTTGCACGGCATTGATAAGAGAAGAGGACCTCTTGACTGGGATGCGCGATTAAAGATTGCTCTTGGAGCTGCAAGAGGTTTGGCATATCTTCACGAAGATTCGAACCCTCGTGTAATTCACCGTGATTTCAAGGCAAGTAACGTTCTGTTGGAAGTAGATTTCACCCCCAAGGTTTCAGATTTTGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACACGCGTGATGGGAACTTTTGGGTACGTCGCCCCTGAATATGCAATGACAGGACACCTTCTCGTCAAAAGCGATGTTTACAGTTATGGAGTTGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTGGACATGTCCCAACCACATGGTGAGGAGAACCTCGTAACATGGGCTCGACCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGACCCTTCTCTAGCTGGTAGTTACGACTTCGACGACATGGCCAAGGTGGCTGCCATTGCTTCTATGTGCGTTCACCCAGAAGTGACCCAAAGGCCATTTATGGGGGAAGTTGTGCAGGCTCTAAAGCTGATATACAACGATACAGACGAGACATGTGCAGACTACTGCAGTCAAAAGGAGTCATCTGCTCGGGACTCCGATTTCAAAGGCGACATTGTTCCATCAGACAGCAGTTGGTGGAATGCTGGTGGCCTTACACCACGACTGACTTTCGGTCAAGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCCCTTGAAGAGATGGAAAACCGGCCGTTTTCAACTTCAAGTTTCATTGGCGACGAGATATCTTTGCCTATTCGGCACGGAAACAGTTGTATCATATCTTCTTTCCGACCGTGCTCGTATCAAAGGCTAATGACGGTTATAGATGTTCACGAAGACAGGTAG 2631 46.07 MLAGADTSSVSLQWAMAVLLRNPEKLAKAQVEIRQVLGKNKPMEEADIPRLPYLQAVVKEALRLHPAGPLLLPRKAKQEVEIAGFTIPKDSQRTELRADSVRRREKDLPWTTTSCENDAFDVGAWTRAIHWIVFLQREKSSGLVAVRNSRVLFVAVSSTAFHGSASQYTSIAASRQSSPHIYLSPSLQPYLQTTTTEIPTEHGPRSAPLPIRHHRRRRRIRPHVIAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNDLESEIAAGTYLEQSQVKIMGAKADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVRLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGGVGDLPITANFVNKSQKMSIKTIGIIALSAFVVLLVFIGALSIFFKWRKVGRPSNAVGPVFTSSINKRSGLGSGLSTSIASSTSVSLISTMPTSIQSVRTFGLSELEKATNKFSSKRILGEGGFGRVYCGILQDGNEVAVKLLTQDNQNRDREFIAEVEMLSRLHHRNLVKLIGICMEGRTRCLVYELIHNGSVESHLHGIDKRRGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDIVPSDSSWWNAGGLTPRLTFGQASSFITMEYSSGPLEEMENRPFSTSSFIGDEISLPIRHGNSCIISSFRPCSYQRLMTVIDVHEDR 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 744556 753154 + CmaCh19G001260.1 Cma19g00126 314814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00126 876 Coils Coil 863 876 - -
Cma19g00126 876 PRINTS E-class P450 group I signature 12 38 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 PRINTS E-class P450 group I signature 55 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 CDD STKc_IRAK 493 762 - -
Cma19g00126 876 SUPERFAMILY Cytochrome P450 1 91 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 Pfam Protein tyrosine and serine/threonine kinase 490 758 IPR001245 GO:0004672|GO:0006468
Cma19g00126 876 SUPERFAMILY Protein kinase-like (PK-like) 470 766 IPR011009 -
Cma19g00126 876 Gene3D Transferase(Phosphotransferase) domain 1 563 786 - -
Cma19g00126 876 PRINTS P450 superfamily signature 3 20 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 PRINTS P450 superfamily signature 56 67 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 ProSiteProfiles Protein kinase domain profile. 487 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00126 876 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 166 852 - -
Cma19g00126 876 Gene3D Cytochrome P450 1 94 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Cma19g00126 876 PANTHER OS01G0750732 PROTEIN 166 852 - -
Cma19g00126 876 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Cma19g00126 876 Pfam Cytochrome P450 1 91 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma19g00126 876 Gene3D Phosphorylase Kinase; domain 1 459 562 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01711 Cma19g00126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00283 Cma-Chr1:1349070 Cma19g00126 Cma-Chr19:744556 1.95E-129 dispersed
Cma10g00720 Cma-Chr10:3251540 Cma19g00126 Cma-Chr19:744556 0 dispersed
Cma11g00695 Cma-Chr11:3381612 Cma19g00126 Cma-Chr19:744556 0 dispersed
Cma14g00938 Cma-Chr14:4862905 Cma19g00126 Cma-Chr19:744556 5.90E-131 dispersed
Cma17g00725 Cma-Chr17:5938256 Cma19g00126 Cma-Chr19:744556 0 dispersed
Cma19g00126 Cma-Chr19:744556 Cma17g01421 Cma-Chr17:9377727 1.22E-102 dispersed
Cma19g00126 Cma-Chr19:744556 Cma02g01711 Cma-Chr2:9635413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69328 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00126 - - csv:101203278 1193.33