Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00136 ATGGCGGTCACTCTTAGACTACAGTTTTCAACCGCTTCATTAATGTTCTTCCTTCTTCTCAACATCCTCTTCGTTCAATCCAGTTTTGCTGGAGATCAGCGATTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGTTTTTCTGGAGATCAGCGACTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGGTATTCTAAGAATGAGCATGCCGTTGATAATCCAGAGGAAATTGCATCAATGGTGGATTTGAGCATACGCAACAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAACCCAATTGATGATTGTTGGCGTTGTGACCCACGGTGGCAACTGCGGCGAAAGCGCCTCGCCGATTGCGGCATTGGGTTTGGCCGTAATGCAGTCGGTGGCCGTGATGGGCGATACTACGTCGTCTCTGATCCACGTGACGATGATCCTGTCAATCCCAGACCAGGCACCCTTCGCCATGCTGTGATTCAAGACAGACCATTATGGATTGTGTTCAAAAGAGACATGGTGATCACTTTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGCGTCAATGTCCACATCGCTTATGGAGCTTGTATTACTATCCAATTCATAACCAATGTTATTATTCATGGTTTGCATATTCATGACTGCAAGCCAACGGGGAACGCCATGGTTCGAAGCTCGCCTAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCAATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCTTGTGCTGATGGGCTCATTGATGCTATCATGGGATCAACTGCTATCACAATTTCTAACAATTACTTCACCCACCACAATGAGGTGATGCTCTTGGGACATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTGACCATTGCCTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATTGGTGGAAGTGCTAATCCCACCATTAATAGCCAGGGCAACCGATATCTTGCCCCCGTCAACCCTTTTGCCAAAGAGGTGACAAAGAGAGTTGTGACATCTAATGGTGTATGGAGGCATTGGAATTGGAGATCGGAGGGAGATCTCATGCTAAATGGAGCCTATTTCACTCCATCAGGGGCTGGTGCAGGAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCTCCCTTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATACCGTTGTTAA 1359 46.28 MAVTLRLQFSTASLMFFLLLNILFVQSSFAGDQRLQSFNSSSMADRFSGDQRLQSFNSSSMADRYSKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKRLADCGIGFGRNAVGGRDGRYYVVSDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVVTSNGVWRHWNWRSEGDLMLNGAYFTPSGAGAGASYARASSLGAKSSSLVGSLTSNAGALSCRRGYRC 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 853549 859463 - CmaCh19G001360.1 Cma19g00136 314824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00136 452 Gene3D - 103 445 IPR012334 -
Cma19g00136 452 SMART amb_all 178 375 IPR002022 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Cma19g00136 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Cma19g00136 452 Pfam Pectate lyase 187 367 IPR002022 -
Cma19g00136 452 SUPERFAMILY Pectin lyase-like 81 447 IPR011050 -
Cma19g00136 452 PANTHER PECTATE LYASE 18-RELATED 22 449 IPR045032 GO:0030570
Cma19g00136 452 PANTHER PECTATE LYASE 22 449 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01698 Cma19g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02549 Cma-Chr4:17458857 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma08g01035 Cma-Chr8:6481057 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma13g00770 Cma-Chr13:6648875 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma18g00204 Cma-Chr18:1108778 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma19g00136 Cma-Chr19:853549 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma19g00136 Cma-Chr19:853549 0 wgd
Cma19g00136 Cma-Chr19:853549 Cma02g01698 Cma-Chr2:9553186 0 wgd
Cma19g00136 Cma-Chr19:853549 Cma06g01265 Cma-Chr6:8417871 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00136 K01728 - csv:101207204 798.505